| Literature DB >> 35464190 |
Vincent Jeanselme1, Brian Tom1, Jessica Barrett1.
Abstract
Survival analysis involves the modelling of the times to event. Proposed neural network approaches maximise the predictive performance of traditional survival models at the cost of their interpretability. This impairs their applicability in high stake domains such as medicine. Providing insights into the survival distributions would tackle this issue and advance the medical understanding of diseases. This paper approaches survival analysis as a mixture of neural baselines whereby different baseline cumulative hazard functions are modelled using positive and monotone neural networks. The efficiency of the solution is demonstrated on three datasets while enabling the discovery of new survival phenotypes.Entities:
Year: 2022 PMID: 35464190 PMCID: PMC7612649
Source DB: PubMed Journal: Proc Mach Learn Res
Figure 1Neural Survival Clustering Architecture.
Percentages of patients observing an outcomes by the evaluation’s times.
| METABRIC | Censored | 2.05 | 6.83 | 18.86 |
| Dead | 14.50 | 28.94 | 43.43 | |
| SUPPORT | Censored | 0.00 | 0.00 | 0.00 |
| Dead | 16.71 | 33.96 | 51.03 | |
| Synthetic | Censored | 5.46 | 13.01 | 20.74 |
Models’ performance - Mean (standard deviation) over the 5-fold cross validation with best performance in bold and second best in italic.
| C Index | Brier Score | ||||||
|---|---|---|---|---|---|---|---|
| Model |
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|
|
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| |
| METABRIC | |||||||
|
| | 0.192 (0.02) | |||||
| DCM | 0.552 (0.08) | 0.543 (0.09) | 0.547 (0.09) | 0.125 (0.01) | 0.210 (0.01) | 0.249 (0.01) | |
| DSM | 0.662 (0.04) | | | ||||
| SuMo-net | | 0.640 (0.03) | | | |||
| DeepHit | 0.680 (0.08) | 0.631 (0.05) | 0.600 (0.03) | 0.120 (0.02) | 0.200 (0.02) | 0.236 (0.01) | |
| DeepSurv | 0.631 (0.04) | 0.633 (0.03) | 0.634 (0.04) | 0.122 (0.02) | 0.197 (0.02) | 0.227 (0.02) | |
| CoxPH | 0.630 (0.02) | 0.626 (0.02) | 0.633 (0.03) | 0.121 (0.01) | 0.196 (0.01) | | |
| SUPPORT | |||||||
|
| | | | ||||
| DCM | 0.690 (0.10) | 0.663 (0.08) | 0.639 (0.06) | 0.132 (0.01) | | 0.220 (0.02) | |
| DSM | 0.733 (0.01) | | 0.653 (0.01) | 0.136 (0.01) | 0.204 (0.01) | 0.219 (0.00) | |
| SuMo-net | | | |||||
| DeepHit | 0.736 (0.01) | 0.685 (0.01) | 0.617 (0.01) | 0.134 (0.01) | 0.210 (0.00) | 0.234 (0.00) | |
| DeepSurv | 0.683 (0.01) | 0.665 (0.01) | 0.663 (0.01) | 0.134 (0.01) | 0.201 (0.01) | 0.216 (0.00) | |
| CoxPH | 0.683 (0.02) | 0.668 (0.01) | 0.667 (0.01) | 0.135 (0.01) | 0.201 (0.01) | 0.214 (0.00) | |
| Synthetic | |||||||
|
| 0.856 (0.01) | 0.838 (0.00) | 0.802 (0.00) | 0.097 (0.00) | 0.134 (0.00) | 0.131 (0.00) | |
| DCM | 0.850 (0.00) | 0.827 (0.00) | 0.806 (0.00) | 0.095 (0.00) | 0.131 (0.00) | 0.145 (0.00) | |
| DSM | 0.858 (0.01) | | | | 0.121 (0.00) | ||
| SuMo-net | |||||||
| DeepHit | | 0.839 (0.01) | | 0.100 (0.00) | 0.153 (0.00) | 0.153 (0.00) | |
| DeepSurv | 0.846 (0.01) | 0.834 (0.00) | 0.087 (0.00) | | | ||
| CoxPH | 0.846 (0.00) | 0.821 (0.00) | 0.794 (0.00) | 0.092 (0.00) | 0.134 (0.00) | 0.152 (0.00) | |
Figure 2Survival clusters observed in the METABRIC dataset.
METABRIC - Clusters’ characteristics
| Models |
| ||||||
|---|---|---|---|---|---|---|---|
| Median Survival | Population % | Censored | || | Age At Diagnosis | Chemotherapy | ERBB2 | |
|
| 102.22 | 23.95 % | 33.55 % | || | 61.20 | 51.75 % | 6.12 |
| DCM | 138.97 | 71.64 % | 37.31 % | || | 64.10 | 22.95 % | 5.88 |
| CWKM | 139.90 | 19.22 % | 49.18 % | || | 48.63 | 99.73 % | 6.01 |
|
| |||||||
| Median Survival | Population % | Censored | || | Age At Diagnosis | Chemotherapy | ERBB2 | |
|
| 135.75 | 45.06 % | 33.57 % | || | 68.94 | 0.23 % | 5.80 |
| DCM | 205.71 | 28.36 % | 54.07 % | || | 53.46 | 15.37 % | 5.85 |
| CWKM | 125.17 | 47.69 % | 28.41 % | || | 72.13 | 3.41 % | 5.84 |
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| |||||||
| Median Survival | Population % | Censored | || | Age At Diagnosis | Chemotherapy | ERBB2 | |
|
| >237.82 | 30.99 % | 61.02 % | || | 49.58 | 26.78 % | 5.79 |
| CWKM | 230.71 | 33.09 % | 57.62 % | || | 52.41 | 0.00 % | 5.84 |