| Literature DB >> 35464036 |
Kaneez Fatima1,2, Suaib Luqman1,2, Abha Meena1,2.
Abstract
Carvacrol, a monoterpene known for its pharmacological activities, is present in the essential oil of Origanum majorana, Origanum vulgare, Thymus vulgaris, and Lippia graveolens. It is used in food as a flavoring and preservative agent in cosmetics and medicines because of its useful bioactivities in clinical practice. However, carvacrol was not much explored for its anticancer potential. Targeting enzymes involved in carcinogenesis, such as ornithine decarboxylase (ODC), cyclooxygenase-2 (COX-2), lipoxygenase-5 (LOX-5), and hyaluronidase (HYAL) by monoterpenes are amongst the efficient approaches for cancer prevention and treatment. In this study, the efficacy of carvacrol was investigated against deregulated cancer biomarkers/targets in organ-specific human cancer cell lines (FaDu, K562, and A549) utilizing in vitro, in silico, and in vivo approaches. The efficacy of carvacrol was evaluated on human cancer cell lines using neutral red uptake (NRU), sulpho rhodamine B (SRB), and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) assays. The mechanistic study was carried out in cell-based test systems. Further, the potency of carvacrol was confirmed by the quantitative real-time PCR analysis and molecular docking studies. The in vivo anti-tumor potential of carvacrol was performed on mice S-180 model, and the toxicity examination was accomplished through in silico approach. Carvacrol significantly impeded the growth of FaDu, K562, and A549 cell lines with IC50 values ranging from 9.61 ± 0.05 to 81.32 ± 11.83 μM. Further, the efficacy of carvacrol was explored against different cancer targets in FaDu, K562, and A549 cell lines. Carvacrol inhibits the ODC, COX-2, LOX-5, and HYAL activities in FaDu cell line and ODC, COX-2, and HYAL activities in K562 cell line. The results were validated by expression analysis revealing the downregulation of the targeted gene with a significant change in the transcript level of ODC and HYAL in FaDu cell line with a fold change of 1.56 and 1.61, respectively. A non-significant effect of carvacrol was observed on the downstream signaling pathway of PI3K and HIF-1α/vascular endothelial growth factor (VEGF) in FaDu cells. The cell cycle, reactive oxygen species (ROS), mitochondrial membrane potential (MMP), and Annexin V-fluorescein isothiocyanate (FITC) experiments demonstrate that carvacrol induces apoptosis of FaDu cells. Further, the potency of carvacrol was also evaluated in vivo on mice S-180 tumor model, wherein it inhibits tumor growth (72%) at 75 mg/kg body weight (bw). ADMET studies predicted carvacrol as a safe molecule. Overall, carvacrol delayed the growth of FaDu, K562, and A549 cell lines by targeting enzymes involved in the carcinogenesis process. The existence of one hydroxyl group at the para position of carvacrol could be responsible for the anti-proliferative activity. Thus, carvacrol could be used as a pharmacophore to develop a safe and effective multi-targeted anti-cancer medicament.Entities:
Keywords: FaDu; biomarkers; carvacrol; hyaluronidase; molecular targets; ornithine decarboxylase
Year: 2022 PMID: 35464036 PMCID: PMC9028219 DOI: 10.3389/fnut.2022.857256
Source DB: PubMed Journal: Front Nutr ISSN: 2296-861X
Primer sequence and size used for the study.
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| 1 | GAPDH (F) | CCACCCATGGCAAATTCC | 18 |
| 2 | GAPDH (R) | TGGGATTTCCATTGATCACAAG | 22 |
| 3 | Dihydro folate reductase (F) | TGGTTCGCTAAACTGCATCGT | 21 |
| 4 | Dihydro folate reductase (R) | GGGCAGGTCCCCGTTCT | 17 |
| 5 | Cyclooxygenase-2 (F) | GAATCATTCACCAGGCAAATTG | 22 |
| 6 | Cyclooxygenase-2 (R) | TCTGTACTGCGGGTGGAACA | 20 |
| 7 | Lipoxygenase-5 (F) | GGGATGGACGCGCAAAG | 17 |
| 8 | Lipoxygenase-5 (R) | TTTACGTCGGTGTTGCTTGAGA | 22 |
| 9 | Hyaluronidase (F) | TGGGCCCCTATGTGATCAAT | 20 |
| 10 | Hyaluronidase (R) | ATGGCACCGCTGGTGACT | 18 |
| 11 | Ornithine decarboxylase (F) | CTGTCGTCTCAGTGTGAAATTCG | 23 |
| 12 | Ornithine decarboxylase (R) | CGCCCGTTCCAAAAGGA | 17 |
| 13 | Cathepsin D (F) | CACCACAAGTACAACAGCGACAA | 23 |
| 14 | Cathepsin D (R) | CGAGCCATAGTGGATGTCAAAC | 22 |
Figure 1Carvacrol dose-dependently suppresses the growth of cancer cell lines. (A) Sulpho rhodamine B (SRB) dye was used to analyse the anti-proliferative effect of carvacrol in cancer cell lines. (B) 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) dye was used to determine the effect of carvacrol in cancer cell lines. (C) Neutral red uptake (NRU) dye was used to detect the potential of carvacrol in cancer cell lines. Data are presented as mean ± SD (n = 3). Comparatively, carvacrol showed a potent effect against the FaDu cell line.
IC50 (μM) of carvacrol in cell-based assay.
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| SRB | 42.01 ± 11.4 | 81.32 ± 11.83 | – |
| MTT | 9.61 ± 0.05 | – | – |
| NRU | – | – | 80.86 ± 8.28 |
| DHFR | – | – | – |
| ODC | 10.15 ± 0.04 | 12.66 ± 0.23 | – |
| COX-2 | 21.86 ± 5.67 | 39.95 ± 10.24 | – |
| LOX-5 | 82.56 ± 3.14 | – | – |
| HYAL | 88.11 ± 10.38 | 62.01 ± 8.4 | – |
| CATD | – | – | – |
SRB, Sulphorhodamine B; MTT, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide; NRU, Neutral Red Uptake; DHFR, Dihydrofolate reductase; ODC, Ornithine decarboxylase; COX-2, Cyclooxygenase 2; LOX-5, Lipoxygenase 5; HYAL, Hyaluronidase; CATD, Cathepsin D; FaDU, Human squamous cell carcinoma epithelial cell line of hypopharynx; K562, Human myelogenous leukemia cell line; A549, Human adenocarcinoma alveolar basal epithelial cells.
Molecular docking interaction of carvacrol with different cancer targets.
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| DHFR | −6.6 | 1.44019E-05 | VAL 115.A, ALA 9.A, VAL 8.A, ILE 7.A, PHE 34.A, TYR 121.A, THR 56.A, ILE 60.A | NO |
| MTX | −11.5 | 3.66366E-09 | TYR 121.A, THR 56.A, ILE 7.A, VAL 115.A, SER 59.A, LEU 67.A, ILE 60.A, ARG 70.A, ARG 32.A, LYS 68.A, ASN 64.A, GLN 35.A, PRO 61.A, PHE 31.A, PHE 34.A, LEU 22.A, GLU 30.A, TYR 33.A, THR 136.A, ALA 9.A, VAL 8.A | 3.9 Å with ILE 7.A; 3.7 Å with GLN 35.A; 4.54 Å with GLU 30.A; 6.2 Å with ARG 70.A |
| ODC | −5.8 | 5.56262E-05 | ARG 277.A, SER 191.B, PHE 192.B, ASP 332.A, TYR 389.A, LYS 69.A, TYR 331.A | NO |
| DFMO | −5.3 | 0.000129439 | HIS 197.A, LYS 69.A, PHE 192.B, ASP 332.A, SER 200.A, ARG 188.B, TYR 331.A, ARG 277.A, SER 191.B, TYR 389.A | 4.6 Å, 4.3 Å with ASP 332.A;4.4 Å with SER 200.A; 5 Å with TYR 389.A |
| COX-2 | −6.6 | 1.44019E-05 | VAL 524.B, VAL 350.B, SER 354.B, LEU 353.B, PHE 519.B, MET 523.B, SER 531.B, TRP 388.B, TYR 386.B, ALA 528.B, LEU 385.B, GLY 527.B | 3.5 Å with GLY 527.B |
| Celecoxib | −8.7 | 4.14876E-07 | PHE 368.B, GLN 372.A, SER 121.A, TYR 374.B, LYS 532.A, PHE 371.A, ILE 124.A SER 126.A, ALA 544.B, PRO 543.B, ARG 44.A, ASP 125.A, GLN 370.A | 4.3 Å with LYS 532.A;4.2 Å with ILE 124.A; 4.3 Å with ASP 125.A |
| LOX-5 | −7.0 | 7.32811E-06 | ALA 453.A, TYR 470.A, PHE 450.A, SER 447.A, GLN 549.A, LEU 448.A, THR 545.A, ARG 370.A, VAL 243.A, ARG 457.A, ILE 454.A | 3.3 Å with ARG370.A |
| Zileuton | −6.5 | 1.70521E-05 | PRO 331.B, GLY 332.B, ILE 330.B, ASP 333.B, TYR 515.A, ARG 384.A, ARG 143.A, TRP 144.B, GLU 146.A, LEU 153.A, MET 145.A | 4.9 Å with TYR 515.A |
| HYAL | −6.5 | 1.70521E-05 | ILE 73.A, ASN 37.A, TYR 75.A, TYR 247.A, TYR 286.A, ASP 129.A, TREP 321.A, VAL 127.A, TYR 202.A | 2.72 Å with ASN 37.A |
| NAC | −4.8 | 0.000301198 | GLY 68.A, ASN 61.A, ARG 67.A, ALA 60.A, GLN 64.A, PHE 66.A, ILE 73.A, THR 72.A, MET 71.A | 3.9 Å with GLN 64.A; 2.9 Å with ILE 73.A; 4.3 Å with MET 71.A |
| CATD | −5.8 | 5.56262E-05 | TYR 15.A, ALA 13.A, GLN 14.A, ASP 33.A, PHE 131.B, SER 80.A, ILE 134.B, TYR 78.A, VAL 31.A, GLY 233.B | 4.6 Å with SER 80.A |
| Pep A | −8.9 | 2.9594E-07 | PRO 312.D, TYR 205.D, ILE 134.D, THR 232.D, VAL 31.C, PHE 131.D, TYR 15.C, GLN 14.C, ALA 13.C, ASP 323.D, SER 235.D, MET 307.D, ASP 231.A, THR 233.D, SER 80.C, GLY 233.D, ASP 33.C, GLY 79.C, ILE 320.D, TYR 78.C, ILE 229.D, ILE 311.D, GLY 35.C | 3.4 Å, 4.1 Å with SER 80.C; 4.7 Å, 4.9 Å with THR 233.D |
DHFR, Dihydro folate reductase; MTX, Methotrexate; ODC, Ornithine decarboxylase; DFMO, α-difluoro methyl ornithine; COX-2, Cyclooxygenase 2; LOX-5, Lipoxygenase 5; HYAL, Hyaluronidase; NAC, N-acetyl cysteine; CATD, Cathepsin D; Pep A, Pepstatin A; BE, Binding energy; Ki, Inhibition constant.
Figure 2Carvacrol modulates the activity of cancer targets in a FaDu, K562, and A549 cell lines. Treated cancer cell lines were determined by the protocol described in materials and methods section. (A) Suppression of ornithine decarboxylase (ODC) activity by carvacrol. (B) Destruction of cyclooxygenase-2 (COX-2) activity by carvacrol. (C) Inflection of lipoxygenase 5 (LOX-5) activity by carvacrol. (D) Modulatory effect of carvacrol on hyaluronidase (HYAL) activity. (E) The suppression of cathepsin D (CATD) activity by carvacrol. The graph is shown in percentage inhibition. Data are presented as mean ± SD (n = 3). Comparatively, carvacrol exhibits a pronounced effect against ODC in FaDu cells.
Figure 3Docked pose of carvacrol with cancer targets were visualized by chimera and their hydrophobic interactions were observed by Discovery studio. Binding energies (BE) were obtained after the docking of carvacrol with the targeted receptor/proteins from AutoVina. Their interacting amino acid residues within 4Å of protein envisaged using discovery studio (A) dihydrofolatereductase (DHFR), (B) methotrexate (MTX), (C) ODC, (D) α-difluoro methyl ornithine (DFMO), (E) COX-2, (F) celecoxib, (G) LOX-5, (H) Zileuton, (I) HYAL, (J) N-acetyl cysteine (NAC), (K) CATD, (L) pepstatin A (PEP A). Carvacrol showed strong interaction with the selected targets, but the interaction of carvacrol with ODC is, even more, more potent than standard (DFMO).
Figure 4Carvacrol affects the transcriptional level of HYAL and ODC in FaDu cell line. The mRNA expression of the tested gene in treated and non-treated FaDu and K562 cell lines were analyzed using real-time qPCR. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was used as an internal control. Data are presented as mean ± SD (n = 3). Carvacrol potently downregulates the expression of ODC in the FaDu cell line (*p < 0.05, **p < 0.01).
Figure 5Carvacrol effects were examined on phosphotidyl inositol-3 kinase (PI3K)/protein kinase B (AKT)/mammalian target of rapamycin (mTOR), histone deacetylase (HDAC)-6, vascular endothelial growth factor (VEGF)/HIF-1α in FaDu cell line. FaDu cells were treated with carvacrol, radioimmuno precipitation assay (RIPA) buffer was used to extract crude protein, and the ELISA kits were used to analyse its inhibitory activity. The effect of carvacrol was non-significant on these targets.
Figure 6Carvacrol arrest the G2/M phase of FaDu cells. Treated FaDu cells were stained with propidium iodide (PI) to determine the arrest of the diverse phase of cells by following a protocol written in the materials and methods section. FACS Diva software was employed to set parameters (SSC, FSC, and PI) and gated concerning untreated FaDu cells. Carvacrol arrests the G2/M phase and increases the number of sub-diploid populations.
Figure 7Carvacrol non-significantly increase the reactive oxygen species (ROS) production and decreases the mitochondrial membrane potential (MMP) in FaDu cells. One set of treated FaDu cells was stained with DCFDA dye, and another set was stained with rhodamine 123 dye, followed by analysis via fluorimeter.
Figure 8Carvacrol non-significantly affect ROS and MMP in FaDu cells. One set of treated FaDu cells was stained with DCFDA dye, and another set was stained with rhodamine 123 dye, followed by analysis by flow cytometer.
Figure 9(A,B) Carvacrol induces late apoptosis and necrosis of FaDu cells. FaDu cells were treated with carvacrol and stained with Annexin V-fluorescein isothiocyanate (FITC) and PI to determine apoptosis and necrosis through flow cytometer. The effect of carvacrol was non-significant and PDT was significant (*p < 0.05).
In vivo activity of carvacrol against Sarcoma-180 model.
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| Carvacrol | 25 | 3.5 ± 0.54 | 3.36 ± 0.60 | 57.5 ± 8.72 | 28.12 |
| 50 | 1.57 ± 0.25 | 1.39 ± 0.33 | 35.25 ± 4.68 | 55.94 | |
| 75 | 1.16 ± 0.34 | 1.10 ± 0.41 | 21.9 ± 1.78 | 72.62 | |
| 5 FU | 20 | 0.16 ± 0.01 | 0.16 ± 0.01 | 5 ± 0.28 | 93.75 |
| Control | NS (0.2 mL) | 4.08 ± 0.52 | 3.91 ± 0.56 | 80.05 ± 7.92 | — |
Significant (p < 0.05),
Highly significant (p < 0.01),
Very highly significant (p < 0.001). Data are mean ± S.E (n = 5).
In silico prediction studies of carvacrol from SwissADME and Iazar.
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| Molecular formula | C10H14O |
| Molecular weight | 150.22 |
| X Log P3 | 3.49 |
| Log S | −3.31 |
| Hydrogen bond donor | 1 |
| Hydrogen bond acceptor | 1 |
| Rotatable bond count | 1 |
| Topological polar surface area | 20.23 A2 |
| GI absorption | High |
| Log | −4.74 cm/s |
| Lipinski rule | Yes; 0 violation |
| Carcinogenicity (Rat) | None |
| Mutagenicity ( | Non-mutagenic |