| Literature DB >> 35460780 |
Aaron Bivins1, Devrim Kaya2, Warish Ahmed3, Joe Brown4, Caitlyn Butler5, Justin Greaves6, Raeann Leal7, Kendra Maas8, Gouthami Rao4, Samendra Sherchan9, Deborah Sills10, Ryan Sinclair7, Robert T Wheeler11, Cresten Mansfeldt12.
Abstract
Much of what is known and theorized concerning passive sampling techniques has been developed considering chemical analytes. Yet, historically, biological analytes, such as Salmonella typhi, have been collected from wastewater via passive sampling with Moore swabs. In response to the COVID-19 pandemic, passive sampling is re-emerging as a promising technique to monitor SARS-CoV-2 RNA in wastewater. Method comparisons and disease surveillance using composite, grab, and passive sampling for SARS-CoV-2 RNA detection have found passive sampling with a variety of materials routinely produced qualitative results superior to grab samples and useful for sub-sewershed surveillance of COVID-19. Among individual studies, SARS-CoV-2 RNA concentrations derived from passive samplers demonstrated heterogeneous correlation with concentrations from paired composite samples ranging from weak (R2 = 0.27, 0.31) to moderate (R2 = 0.59) to strong (R2 = 0.76). Among passive sampler materials, electronegative membranes have shown great promise with linear uptake of SARS-CoV-2 RNA observed for exposure durations of 24 to 48 h and in several cases RNA positivity on par with composite samples. Continuing development of passive sampling methods for the surveillance of infectious diseases via diverse forms of fecal waste should focus on optimizing sampler materials for the efficient uptake and recovery of biological analytes, kit-free extraction, and resource-efficient testing methods capable of rapidly producing qualitative or quantitative data. With such refinements passive sampling could prove to be a fundamental tool for scaling wastewater surveillance of infectious disease, especially among the 1.8 billion persons living in low-resource settings served by non-traditional wastewater collection infrastructure.Entities:
Keywords: COVID-19; Environmental surveillance; Moore swab; Passive sampling; SARS-CoV-2; Wastewater surveillance; Wastewater-based epidemiology
Mesh:
Substances:
Year: 2022 PMID: 35460780 PMCID: PMC9020839 DOI: 10.1016/j.scitotenv.2022.155347
Source DB: PubMed Journal: Sci Total Environ ISSN: 0048-9697 Impact factor: 10.753
Wastewater surveillance publications reporting the use of passive sampling for SARS-CoV-2 RNA or COVID-19.
| Setting | Location | Population | Quantitative or qualitative | Quantitative unit | Swab deployment frequency | Material | Swabs per deployment | Housing type | Exposure time | Portion used for analysis | Concentration method | Analytical platform | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Municipal wastewater system | Melbourne, Victoria, Australia | 260 to 2.6 M | Quantitative | GC/unit sample material | NR | Cotton gauze; electronegative membrane; cotton buds; | 3 replicates per material | Colander; boat; box; torpedo | 3 to 24 h | Direct extraction (cotton bud, electronegative filter); eluate (gauze) | Electronegative filter (gauze eluate) | RT-qPCR | |
| Office complex, university | Halifax, Nova Scotia, Canada | Unknown | Quantitative | GC/swab eluate | 15 events over 5 months | Cotton gauze; cheesecloth; cellulose sponge; electronegative membrane | 1 replicate per material | COSCa | 24 h | Eluate | NA | RT-qPCR | |
| Municipal | Guelph, Ontario, Canada | NR | Quantitative | GC/sampler | 3 events over 1 month | Cotton gauze; cotton bud; electronegative membrane | 6 replicates per material | Torpedo | 4 h | Direct extraction (cotton bud, electronegative filter); eluate (gauze) | Electronegative filter (gauze eluate) | RT-qPCR | |
| University | Windsor-Essex, Ontario, Canada | ~200 | Quantitative | PMMoV-normalized | 3 days per week to daily | Tampon | 2 | None | 20 h | Swab sorbate | Ultrafiltration via CP Select | RT-qPCR | |
| University | South Bend, Indiana, USA | 1627 | Qualitative | NA | 1 day per week | Tampon | 1 | None | 3 h | Swab sorbate + eluate solids fraction | NA | RT-LAMP | |
| Municipal | Tehran, Iran | NR | Qualitative | NA | 2 events over 5 months | Cotton gauze | 1 | Stainless steel wire cage | 16 h | Swab sorbate + eluate liquid fraction | PEG precipitation | RT-qPCR | |
| University | Atlanta, Georgia, USA | NR | Qualitative | NA | 1 event per week | Cotton gauze | 1 | None | 24 to 72 h | Swab sorbate + eluate | Skimmed milk flocculation; PEG | RT-qPCR | |
| University | Atlanta, Georgia, USA | 91 to 600 | Qualitative | NA | 1 event per week | Cotton gauze | 1 | None | 24 to 72 h | Swab sorbate + eluate | Skimmed milk flocculation; PEG | RT-qPCR | |
| Olympic village | Tokyo, Japan | NR | Qualitative | NR | NR | NR | NR | NR | NR | NR | NR | RT-qPCR | |
| Bench scale; Residential area; Office complex; University | Halifax, Nova Scotia, Canada | Unknown | Quantitative | GC/swab eluate | 23 events over 15 weeks | Electronegative membrane | 1 | COSCa | 24 to 72 h | Eluate | NA | RT-qPCR | |
| Municipal | Queensland, Australia | 13,000 to 231,000 | Quantitative | GC/sampler | 2 events | Electronegative membrane; cotton buds; cotton gauze; tampon | 1 | Hair roller (tampon); torpedo (others) | Up to 48 h | Sorbate (tampon); eluate (cotton gauze); direct extraction (membrane, cotton buds) | Ultrafiltration (tampon); electronegative filter (gauze eluate) | RT-qPCR |
PMMoV = pepper mild mottle virus.
PEG = polyethylene glycol.
Fig. 1Comparison of the reported SARS-CoV-2 concentrations in wastewater by composite sampling, genome copies per liter (GC/L), with paired passive samples, genome copies per passive sampler processed (GC/passive sampler processed) across five studies. Schang et al. (2021) (dark gray) and Habtewold et al. (2022) (open circles) data were extracted from the published supplemental. Habtewold et al. (2022) compares three different passive sampler types to a paired composite, therefore although nine points are represented, these represent three paired samples. The University of Massachusetts Amherst (UMass, gold), University of Maine (UMaine, red), and University of Connecticut (UConn, blue) datasets (unpublished) were provided by co-authors. Brief descriptions of these sampling campaigns are provided in the Supplemental Information. The concentrations were log transformed, and linear regressions were fit to each series individually (except for Habtewold et al., 2022) and to the aggregated data with the resulting fit and r2 shown. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)