| Literature DB >> 35458605 |
Xinning Liu1, Menghan Wu2, Chenchen Li3, Peng Yu2, Shanshan Feng4, Yanwei Li1,5, Qingzhu Zhang1.
Abstract
Heavy metals are non-biodegradable and carcinogenic pollutants with great bio-accumulation potential. Their ubiquitous occurrence in water and soils has caused serious environmental concerns. Effective strategies that can eliminate the heavy metal pollution are urgently needed. Here the adsorption potential of seven heavy metal cations (Cd2+, Cu2+, Fe3+, Hg2+, Mn2+, Ni2+ and Zn2+) with 20 amino acids was systematically investigated with Density Functional Theory method. The binding energies calculated at B3LYP-D3/def2TZVP level showed that the contribution order of amino acid side chains to the binding affinity was carboxyl > benzene ring > hydroxyl > sulfhydryl > amino group. The affinity order was inversely proportional to the radius and charge transfer of heavy metal cations, approximately following the order of: Ni2+ > Fe3+ > Cu2+ > Hg2+ > Zn2+ > Cd2+ > Mn2+. Compared to the gas-phase in other researches, the water environment has a significant influence on structures and binding energies of the heavy metal and amino acid binary complexes. Collectively, the present results will provide a basis for the design of a chelating agent (e.g., adding carboxyl or a benzene ring) to effectively remove heavy metals from the environment.Entities:
Keywords: DFT; amino acids; binding affinity; heavy metal and amino acid binary complexes; heavy metal cations
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Year: 2022 PMID: 35458605 PMCID: PMC9028192 DOI: 10.3390/molecules27082407
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.927
Figure 1The stable configurations of 20 amino acids in a zwitterionic state (a) and the relative free energies (∆G) of 20 amino acids (b), including zwitterionic states (ZW-AA), left-handed natural AA (L-AA) and right -handed natural AA (D-AA).
Figure 2The optimized structures of [acidic/sulfhydryl/hydroxy AA-metal cation] complexes. AA = Asp (a), Glu (b), Cys (c), Ser (d); the numbers in the figure indicated the hydrogen bond length in a complex molecule, and the distance between the metal cation and the interacting atom; the length in Å.
Figure 3The comparison of the most stable complex binding energies during 20 AAs and seven kinds of metal cation interactions.