| Literature DB >> 35456429 |
Melitza S M Elizabeth1,2, Anita Hokken-Koelega2,3,4, Jenny A Visser1, Sjoerd D Joustra5, Laura C G de Graaff1,2,6.
Abstract
In recent years, variants in immunoglobulin superfamily member 1 (IGSF1) have been associated with congenital hypopituitarism. Initially, IGSF1 variants were only reported in patients with central hypothyroidism (CeH) and macroorchidism. Later on, IGSF1 variants were also reported in patients with additional endocrinopathies, sometimes without macroorchidism. We studied IGSF1 as a new candidate gene for patients with combined CeH and growth hormone deficiency (GHD). We screened 80 male and 14 female Dutch patients with combined CeH and GHD for variants in the extracellular region of IGSF1, and we report detailed biomedical and clinical data of index cases and relatives. We identified three variants in our patient cohort, of which two were novel variants of unknown significance (p.L570I and c.1765+37C>A). In conclusion, we screened 94 patients with CeH and GHD and found variants in IGSF1 of which p.L570I could be of functional relevance. We provide detailed phenotypic data of two boys with the p.C947R variant and their large family. The remarkable phenotype of some of the relatives sheds new light on the phenotypic spectrum of IGSF1 variants.Entities:
Keywords: IGSF1; genetic variation; growth hormone; hypothyroidism; pituitary hormones
Mesh:
Substances:
Year: 2022 PMID: 35456429 PMCID: PMC9024824 DOI: 10.3390/genes13040623
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.141
Figure 1Schematic representation of IGSF1 protein domain structure and the relative locations of the mutations identified in this study and previously reported pathogenic mutations. The two novel variants (p.L570I and c.1765+37C>A) are framed in black. The pathogenic variant is labeled with (★). Region screened in this study (grey).
Overview of variants found in the extracellular regions of ISGF1 in 94 Dutch patients with a combination of CeH and growth hormone deficiency. VUS = Variance of uncertain significance; HL = Hydrophobic linker domain.
| cDNA | Protein | Type of Variant | Ig | Reference | Variation | ACMG | GNOMAd MAF |
|---|---|---|---|---|---|---|---|
| c.1709C>A | p.L570I | Missense | HL | Novel variant | VUS | US (ii) | Variant not found in online data sets |
| c.1765+37C>A | Intron | Novel variant | VUS | US (i) | Variant not found in online data sets | ||
| c.2839 T>C | p.C947A | Missense | 9 | [ | pathogenic | PS3 |
Summary of in silico analysis by VEP analysis.
| Variant ID | Sift | PolyPhen | LofTool | CADDphred | ClinPred | GERP++NR | MexEntScan |
|---|---|---|---|---|---|---|---|
| p.L570I | 0.3 | 0.942 | 0.379 | 17.95 | D | 5.04 | - |
| c.1765+37C>A | - | - | - | - | - | - | - |
Figure 2Family pedigree of the two brothers with the p.C947R variant showing affected and carrier family members. Numbers I, II and III indicate the first, second and third generation. Closed figures = hemizygous p.C947R variant; half open figures = carrier.
Longitudinal data on testicular volume, FSH, LH and testosterone levels of the two brothers with a p.C947R variant. Testicular volume according to Tanner, standard deviation score is indicated between brackets [21].
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| LT4 dose | µg/kg/day | 0 | 3 | 3 | 2 | 1.5 | NA | NA | |
| TSH | mIU/L | 3.6 | <0.005 | 0.002 | <0.001 | <0.001 | <0.001 | <0.001 | |
| FSH | U/L | 6.1 | |||||||
| LH | U/L | 1.3 | |||||||
| Testosteron | nmol/L | 0.3 | 0.3 | 2.1 | 7 | ||||
| Testicular volume | mL | 2 | 3 | 12 | 18 | 30 | |||
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| LT4 DOSE | µg/kg/day | 0 | 3 | 2 | NA | NA | NA | NA | 2 |
| TSH | mIU/L | 6 | <0.05 | 0.29 | <0.001 | ||||
| FSH | U/L | 4.6 | 0.3 | ||||||
| LH | U/L | 0.4 | 4.6 | ||||||
| Testosteron | nmol/L | 0.2 | 2.2 | 5 | 5.2 | ||||
| Testicular volume | mL | 2 | 3 | 6 | 8 | 16 | 23 | >30 | |
Biochemical data of the affected and non-affected relatives.
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| Unit | A | B | C | A | B | C | ||||||||
| Genotype | Affected | Affected | WT | WT | WT | |||||||||
| Sex | Male | Male | Male | Male | Male | Male | Female | |||||||
| TSH | mIU/L | 0.002 ↓ | 45.6 ↑ | 30.6 ↑ | 0.001 ↓ | 37.2 ↑ | 26.0 ↑ | 1.77 | 0.77 | 1.89 | 0.4 | 4.3 | 0.4 | 4.3 |
| T4 | nmol/L | 73 | 27.1 ↓ | 27.5 ↓ | 86 | 10.9 ↓ | 10.5 ↓ | 72.5 | 90 | 84.00 | 0.4 | 4.3 | 0.4 | 4.3 |
| FT4 | pmol/L | 14.6 | 3.9 ↓ | 4.1 ↓ | 16.2 | 1.0 ↓ | 1.1 ↓ | 13 | 18.3 | 16.30 | 9 | 23 | 9 | 23 |
| T3 | nmol/L | 1.49 | 1.23 ↓ | 1.32 ↓ | 1.77 | 0.66 ↓ | 0.68 ↓ | 1.87 | 1.98 | 2.19 | 11 | 25 | 11 | 25 |
| FSH | U/L | 4 | 5.6 | 5.3 | 10.0 ↑ | 13.2 ↑ | 10.0 ↑ | 3.27 | 2.12 | 1.84 | 1.4 | 2.5 | 1.4 | 2.5 |
| LH | U/L | 0.7 ↓ | 3.2 | 2.6 | 1.5 | 2.6 | 1.2 ↓ | 5.17 | 3.84 | 1.23 | 2 | 7 | 1 | 15 |
| SHBG | nmol/L | 4.6 ↓ | 2.7 ↓ | 2.9 ↓ | 12 | 8.2 ↓ | 7.0 ↓ | 14.1 | 18.8 | 27.60 | 1.5 | 8 | 15 | 90 |
| Testosterone | nmol/L | 5.8 ↓ | 12 | 8.3 ↓ | 9.9 ↓ | 17.7 | 13.2 | 15 | 24 | 16.50 | 10 | 70 | 20 | 120 |
| Estradiol | pmol/L | 58 | 138 | 106 | 10 ↓ | 130 | 75 | 176 | 10 | 30 | 0.5 | 3 | ||
| Inhibin B | ng/L | 344 | 301 | 405 ↑ | 351 | 424 ↑ | 348 | 196 | 317 | 360 | 150 | 400 | <10 | |
| AMH | µg/L | 17.5 ↑ | 18.5 ↑ | 18.0 ↑ | 15.9 ↑ | 18.3 ↑ | 17.7↑ | 15.06 | 5.1 | 9.1 | 2 | 14 | ||
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| Genotype | WT | Affected | WT | WT | Affected | WT | ||||||||
| Sex | Male | Female | Female | Male | Male | Male | Male | Female | ||||||
| TSH | mIU/L | 3.69 | 0.82 | 1.31 | 0.14 ↓ | 0.28 ↓ | 0.6 | 0.4 | 4.3 | 0.4 | 4.3 | |||
| T4 | nmol/L | 81.1 | 98 | 85 | 93 | 73 | 114 | 0.4 | 4.3 | 0.4 | 4.3 | |||
| FT4 | pmol/L | 14.3 | 15.5 | 16.8 | 19.4 | 15.7 | 22.3 | 58 | 128 | 58 | 128 | |||
| T3 | nmol/L | 2.36 | 1.81 | 2.02 | 1.97 | 1.5 | 2.04 | 11 | 25 | 11 | 25 | |||
| FSH | U/L | 4.54 | 44.9 | 69.5 | 2.56 | 18.7 ↑ | 58.8 | 1.4 | 2.5 | 1.4 | 2.5 | |||
| LH | U/L | 3.3 | 12 ↓ | 34.5 | 4.64 | 4.1 | 15.6 | 2 | 7 | 1 | 15 | |||
| SHBG | nmol/L | 24 | 32.9 | 61.6 | 22.6 | 19.4 | 67.1 | 1.5 | 8 | 15 | 90 | |||
| Testosterone | nmol/L | 12.4 | 0.8 | 0.8 | 14.8 | 9.0 ↓ | 0.4 ↓ | 10 | 70 | 20 | 120 | |||
| Estradiol | pmol/L | 77 | 46 | 10 | 30 | 0.5 | 3 | |||||||
| Inhibin B | ng/L | 188 | <10 ↓ | < 10 ↓ | 196 | 113 ↓ | <10 ↓ | 150 | 400 | <10 | ||||
| AMH | µg/L | 12 | <0.1 | 2.1 ↓ | 5.1 | 9.1 | 2 | 14 | ||||||
The normal range for males and females is shown in the column on the right. ↓ value below the lower limit of normal; ↑ = value above the upper limit of normal.
Overview of clinical features of the two brothers with a p.C947R variant and their first- and second-degree relatives.
| III-4 | III-5 | III-3 | III-6 | III-7 | III-11 | III-12 | II-5 | II-6 | II-7 | II-8 | II-9 | I-2 | I-8 | I-9 | I-3 | I-5 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Genotype | Affected | WT | Affected | WT | WT | WT | WT | WT | Affected | WT | WT | Affected | WT | WT | WT | WT | WT |
| Gender | Male | Male | Male | Male | Male | Male | Male | Male | Female | Female | Male | Male | Male | Female | |||
| Adult height (CM) | NA | normal with rhGH treatment | NA | 174 | 180.6 | 192 | 206 | 176 | 159 | 162.5 | 180.6 | 186.4 | 170 | 153.5 | |||
| Weight | 73 | 80 | 86 | 88 | 67.2 | 83 | 62.4 | ||||||||||
| Sitting height | 91 | 92.9 | 94.8 | 85.2 | 84.8 | 95 | 97 | ||||||||||
| Head size | UNR | UNR | UNR | UNR | UNR | UNR | UNR | UNR | Normal (53 cm) | Normal (56 cm) | UNR | UNR | UNR | UNR | |||
| Thyroid size | HP | HP | UNR | UNR | UNR | UNR | UNR | UNR | Normal | Normal | Normal | Normal | UNR | UNR | Normal | ||
| Thyroid function | CeH | CeH | Normal | CET | CET | Normal | Normal | CET | CET | CET | CET | CET | CET | CET | |||
| Testes | Large-normal | Enlarged | Normal | Normal | Normal | Normal | Normal | Normal | NA | NA | Normal | Cryptorchism until Pregnyl | NA | NA | |||
| Pituitary imaging | Normal | Normal | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | |||
| Psychomotor Development | Normal | Normal | Normal | Slightly delayed, adult: Normal | UNR | UNR | UNR | UNR | UNR | UNR | UNR | slow (until Pregnyl/ LT4) | UNR | UNR | UNR | UNR | |
| Onset of puberty * | Normal | Normal | Normal | Normal | Normal | Normal | Normal | Normal | Delayed (16 y) | Normal | Normal | Delayed (Pregnyl) | NA | Delayed (16 y) | |||
| Fertility | NYK | NYK | NYK | NYK | NYK | NYK | NYK | Normal | Normal | Normal | Normal | Normal | Normal | Normal | |||
| Menopause | NA | NA | NA | NA | NA | NA | NA | NA | 44 | 50 | NA | NA | NA | NA | 46 | NA | |
| Other | Benign cerebellar tumor | Only male offspring | Only male offspring | Only male ffspring | Only male offspring | Only male offspring | Shortlegs | Short legs | Short legs |
* Onset of puberty as estimated by patients and relatives based on physical appearance (not based on testicular volume or serum hormone levels). NA = not assessed; UNR = unremarkable; CET = clinically euthyroid; NYK = not yet known; HP = hypoplastic.
Figure 3TRH stimulation tests results of patient III-4 and III5 with the p.C947R variant. Y-axis shows TSH (mIU/L) (in grey) and prolactine (ug/L) hormone concentrations (in black).