Literature DB >> 35455361

Transcriptomics of Acute DENV-Specific CD8+ T Cells Does Not Support Qualitative Differences as Drivers of Disease Severity.

Alba Grifoni1, Hannah Voic1, Esther Dawen Yu1, Jose Mateus1, Kai Mei Yan Fung1, Alice Wang1, Grégory Seumois1, Aruna D De Silva1,2, Rashika Tennekon2, Sunil Premawansa3, Gayani Premawansa4, Rashmi Tippalagama1,2, Ananda Wijewickrama5, Ashu Chawla1, Jason Greenbaum1, Bjoern Peters1,6, Vijayanand Pandurangan1,6, Daniela Weiskopf1, Alessandro Sette1,6.   

Abstract

While several lines of evidence suggest a protective role of T cells against disease associated with Dengue virus (DENV) infection, their potential contribution to immunopathology in the acute phase of DENV infection remains controversial, and it has been hypothesized that the more severe form of the disease (dengue hemorrhagic fever, DHF) is associated with altered T cell responses. To address this question, we determined the transcriptomic profiles of DENV-specific CD8+ T cells in a cohort of 40 hospitalized dengue patients with either a milder form of the disease (dengue fever, DF) or a more severe disease form (dengue hemorrhagic fever, DHF). We found multiple transcriptomic signatures, one associated with DENV-specific interferon-gamma responding cells and two other gene signatures, one specifically associated with the acute phase and the other with the early convalescent phase. Additionally, we found no differences in quantity and quality of DENV-specific CD8+ T cells based on disease severity. Taken together with previous findings that did not detect altered DENV-specific CD4 T cell responses, the current analysis argues against alteration in DENV-specific T cell responses as being a correlate of immunopathology.

Entities:  

Keywords:  CD8+ T cells; DENV; hemorrhagic disease; phenotypes; transcriptome

Year:  2022        PMID: 35455361      PMCID: PMC9029181          DOI: 10.3390/vaccines10040612

Source DB:  PubMed          Journal:  Vaccines (Basel)        ISSN: 2076-393X


  57 in total

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Journal:  Nat Protoc       Date:  2014-01-02       Impact factor: 13.491

2.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

Authors:  Yang Liao; Gordon K Smyth; Wei Shi
Journal:  Bioinformatics       Date:  2013-11-13       Impact factor: 6.937

3.  STAR: ultrafast universal RNA-seq aligner.

Authors:  Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

Review 4.  Progress and Works in Progress: Update on Flavivirus Vaccine Development.

Authors:  Matthew H Collins; Stefan W Metz
Journal:  Clin Ther       Date:  2017-07-25       Impact factor: 3.393

5.  Precursors of human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis.

Authors:  Veena S Patil; Ariel Madrigal; Benjamin J Schmiedel; James Clarke; Patrick O'Rourke; Aruna D de Silva; Eva Harris; Bjoern Peters; Gregory Seumois; Daniela Weiskopf; Alessandro Sette; Pandurangan Vijayanand
Journal:  Sci Immunol       Date:  2018-01-19

6.  Robust and Balanced Immune Responses to All 4 Dengue Virus Serotypes Following Administration of a Single Dose of a Live Attenuated Tetravalent Dengue Vaccine to Healthy, Flavivirus-Naive Adults.

Authors:  Beth D Kirkpatrick; Anna P Durbin; Kristen K Pierce; Marya P Carmolli; Cecilia M Tibery; Palmtama L Grier; Noreen Hynes; Sean A Diehl; Dan Elwood; Adrienne P Jarvis; Beulah P Sabundayo; Caroline E Lyon; Catherine J Larsson; Matthew Jo; Janece M Lovchik; Catherine J Luke; Mary C Walsh; Ellen A Fraser; Kanta Subbarao; Steven S Whitehead
Journal:  J Infect Dis       Date:  2015-03-22       Impact factor: 5.226

Review 7.  Human T Cell Response to Dengue Virus Infection.

Authors:  Yuan Tian; Alba Grifoni; Alessandro Sette; Daniela Weiskopf
Journal:  Front Immunol       Date:  2019-09-04       Impact factor: 7.561

8.  Therapeutic efficacy of antibodies lacking Fcγ receptor binding against lethal dengue virus infection is due to neutralizing potency and blocking of enhancing antibodies [corrected].

Authors:  Katherine L Williams; Soila Sukupolvi-Petty; Martina Beltramello; Syd Johnson; Federica Sallusto; Antonio Lanzavecchia; Michael S Diamond; Eva Harris
Journal:  PLoS Pathog       Date:  2013-02-14       Impact factor: 6.823

9.  WGCNA: an R package for weighted correlation network analysis.

Authors:  Peter Langfelder; Steve Horvath
Journal:  BMC Bioinformatics       Date:  2008-12-29       Impact factor: 3.169

10.  Cooperation between CD4+ T Cells and Humoral Immunity Is Critical for Protection against Dengue Using a DNA Vaccine Based on the NS1 Antigen.

Authors:  Antônio J S Gonçalves; Edson R A Oliveira; Simone M Costa; Marciano V Paes; Juliana F A Silva; Adriana S Azevedo; Marcio Mantuano-Barradas; Ana Cristina M A Nogueira; Cecília J Almeida; Ada M B Alves
Journal:  PLoS Negl Trop Dis       Date:  2015-12-09
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