| Literature DB >> 35454075 |
Gilberto Vargas-Alarcón1, Julian Ramírez-Bello2, Rosalinda Posadas-Sánchez2, Gustavo Rojas-Velasco3, Alberto López-Reyes4, Laura Martínez-Gómez4, Silvestre Ortega-Peña4, Isela Montúfar-Robles5, Rosa Elda Barbosa-Cobos6, Marva Arellano-González1, José Manuel Fragoso1.
Abstract
We conducted a case-control study in order to evaluate whether ABO gene polymorphisms were associated with a high risk of developing COVID-19 in a cohort of patients. Six ABO gene polymorphisms (rs651007 T/C, rs579459 T/C, rs495828 T/G, rs8176746 A/C, rs8176740 T/A, and rs512770 T/C) were determined using TaqMan genotyping assays in a group of 415 COVID-19 patients and 288 healthy controls. The distribution of rs651007 T/C, rs579459 T/C, rs495828 T/G, and rs8176746 A/C polymorphisms was similar in patients and healthy controls. Nonetheless, under co-dominant (OR = 1.89, pCCo-dominant = 6 × 10-6), recessive (OR = 1.98, pCRecessive = 1 × 10-4), and additive (OR = 1.36, pCAdditive = 3 × 10-3) models, the TT genotype of the rs8176740 T/A polymorphism increased the risk of developing COVID-19. In the same way, under co-dominant, recessive, and additive models, the TT genotype of the rs512770 T/C polymorphism was associated with a high risk of developing COVID-19 (OR = 1.87, pCCo-dominant = 2 × 10-3; OR = 1.87, pCRecessive = 5 × 10-4; and OR = 1.35, pCAdditive = 4 × 10-3, respectively). On the other hand, the GTC and GAT haplotypes were associated with a high risk of COVID-19 (OR = 5.45, pC = 1 × 10-6 and OR = 6.33, pC = 1 × 10-6, respectively). In addition, the rs8176740 TT genotype was associated with high-platelet plasma concentrations in patients with COVID-19. Our data suggested that the ABO rs512770 T/C and rs8176740 T/A polymorphisms increased the risk of developing COVID-19 and the plasma concentration of platelets.Entities:
Keywords: COVID-19; SARS-CoV-2; genetics; human ABO blood group system; susceptibility
Mesh:
Substances:
Year: 2022 PMID: 35454075 PMCID: PMC9027896 DOI: 10.3390/biom12040486
Source DB: PubMed Journal: Biomolecules ISSN: 2218-273X
Demographic and clinical parameters of the COVID-19 patients.
| Characteristics | COVID-19 Patients ( |
|---|---|
| Age (years) | 52.2 ± 14.8 |
| Sex n (%) | 254 (61) Male |
| 161 (39) Female | |
|
| |
| Cough n (%) | 292 (70.3) |
| Dyspnea n (%) | 196 (47.2) |
| Chest Pain n (%) | 62 (15) |
| Headache n (%) | 188 (45.3) |
| Myalgia n (%) | 168 (40.4) |
| Fatigue n (%) | 168 (40.4) |
| Abdominal Pain n (%) | 44 (10.6) |
| Nausea n (%) | 58 (14) |
| Emesis n (%) | 40 (9.6) |
| Diarrhea n (%) | 61 (14.6) |
| Odynophagia n (%) | 116 (28) |
| Fever n (%) | 97 (23.3) |
| Rhinorrhea n (%) | 81 (19.5) |
| Temperature ºC | 36.58 ± 0.99 |
| Oxygen saturation (SpO2) | 88.67 ± 10.60 |
| Heart rate | 87.67 ± 19.32 |
|
| |
| Obesity n (%) | 238 (57.3) |
| TDM2 n (%) | 124 (29.8) |
| Hypertension n (%) | 142 (34.2) |
|
| |
| Creatinine (mg/dL) | 0.86 (0.64–1.19) |
| Ferritin (ng/μL) | 463.5 (228.5–951) |
| LDH (U/dL) | 276.6 (189–391) |
| C reactive protein (mg/dL) | 13.5 (2.23–89.9) |
| Total bilirubin (mg/dl) | 0.60 (0.44–0.88) |
| ALT (U/dL) | 38 (22.7–68.3) |
| AST (U/dL) | 38 (24–59.8) |
| Hemoglobin (g/dL) | 14.2 (11.8–15.5) |
| Platelets (103/µL) | 248 (198–324.2) |
Abbreviations: LDH, lactic acid dehydrogenase; ALT, alanine transaminase; AST, aspartate aminotransferase. Data are expressed as mean ± standard deviation, percentage, and median-percentiles (25–75th).
Allele and genotype distributions of ABO gene polymorphisms in COVID-19 patients and healthy controls.
| Polymorphic | COVID-19 | Controls | * | |
|---|---|---|---|---|
| rs651007 | ||||
| Allele | ||||
|
| 732 (88) | 493 (86) | NS | |
|
| 98 (12) | 83 (14) | ||
| Genotype | ||||
|
| 323 (77.8) | 214 (74.3) | ||
|
| 86 (20.7) | 65 (22.6) | NS | |
|
| 6 (1.4) | 9 (3.1) | ||
| rs579459 | ||||
| Allele | ||||
|
| 727 (88) | 492 (85) | NS | |
|
| 103 (12) | 84 (15) | ||
| Genotype | ||||
|
| 319 (76.9) | 213 (74) | ||
|
| 89 (21.4) | 66 (22.9) | NS | |
|
| 7 (1.7) | 9 (3.1) | ||
| rs495828 | ||||
| Allele | ||||
|
| 727 (88) | 492 (85) | NS | |
|
| 103 (12) | 84 (15) | ||
| Genotype | ||||
|
| 320 (77.1) | 214 (74.3) | ||
|
| 87 (21) | 64 (22.2) | NS | |
|
| 8 (1.9) | 10 (3.5) | ||
| rs8176746 | ||||
| Allele | ||||
|
| 783 (94) | 549 (95) | NS | |
|
| 47 (6) | 27 (5) | ||
| Genotype | ||||
|
| 368 (88.7) | 261 (90.6) | ||
|
| 47 (11.3) | 27 (9.4) | NS | |
|
| 0 (0) | 0 (0) | ||
| rs8176740 | ||||
| Allele | ||||
|
| 382 (46) | 312 (54) | 0.002 | |
|
| 448 (54) | 264 (46) | ||
| Genotype | ||||
|
| 101 (24.3) | 80 (27.8) | ||
|
| 180 (43.4) | 152 (52.8) | 0.0002 | |
|
| 134 (32.3) | 56 (19.4) | ||
| rs512770 | ||||
| Allele | ||||
|
| 389 (47) | 315 (55) | 0.003 | |
|
| 441 (53) | 261 (45) | ||
| Genotype | ||||
|
| 101 (24.3) | 82 (28.5) | ||
|
| 187 (45.1) | 151 (52.4) | 0.0006 | |
|
| 127 (30.6) | 55 (19.1) |
Data are shown as n and frequency. * Chi-squared test. NS: Not significant.
Association of ABO SNPs with COVID-19.
| MAF | Model | OR (95% CI) | pC | ||||
|---|---|---|---|---|---|---|---|
| rs8176740 | |||||||
| Control |
|
|
|
| |||
| ( | 80 (0.278) | 151 (0.528) | 56 (0.194) | 0.46 |
| 1.89 (1.23–2.91) | 6 × 10−4 |
|
| 1.19 (0.85–1.68) | 0.309 | |||||
| COVID-19 | 101 (0.243) | 180 (0.434) | 134(0.323) | 0.54 |
| 1.98 (1.38–2.83) | 1 × 10−4 |
| ( |
| 0.69 (0.51–0.93) | 0.014 | ||||
|
| 1.24 (0.98–1.58) | 3 × 10.3 | |||||
| rs512770 | |||||||
| Control |
|
|
|
| |||
| ( | 82 (0.285) | 151 (0.524) | 55 (0.191) | 0.45 |
| 1.87 (1.22–2.88) | 2 × 10−3 |
|
| 1.24 (0.88–1.74) | 0.219 | |||||
| COVID-19 | 101 (0.243) | 187 (0.451) | 127(0.306) | 0.53 |
| 1.87 (1.30–2.68) | 5 × 10−4 |
| ( |
| 0.74 (0.55–1.01) | 0.055 | ||||
|
| 1.35 (1.10–1.67) | 4 × 10−3 |
Abbreviations: COVID-19, severe acute respiratory syndrome coronavirus 2; MAF, minor allele frequency; OR, odds ratio; CI, confidence interval; pC, p-corrected. The p-values were calculated by the logistic regression analysis, and ORs were adjusted for age and sex.
Frequencies of ABO haplotypes in the 5′UTR region and coding region in the study.
| Haplotype | 5′UTR Region | COVID-19 ( | Controls ( | OR | 95% CI | ||
|---|---|---|---|---|---|---|---|
| rs651007 | rs579459 | rs495828 | Hf | Hf | |||
|
|
|
| 0.873 | 0.852 | 1.19 | 0.87–1.62 | 0.261 |
|
|
|
| 0.118 | 0.144 | 0.79 | 0.58–1.09 | 0.179 |
| Haplotype | Coding region | Hf | Hf | ||||
| rs8176746 | rs8176740 | rs512770 | |||||
|
|
|
| 0.452 | 0.441 | 1.04 | 0.84–1.29 | 0.689 |
|
|
|
| 0.332 | 0.483 | 0.53 | 0.43–0.66 | 1 × 10−6 |
|
|
|
| 0.088 | 0.018 | 5.45 | 2.79–10.6 | 1 × 10−6 |
|
|
|
| 0.049 | 0.046 | 1.10 | 0.66–1.82 | 0.699 |
|
|
|
| 0.072 | 0.011 | 6.33 | 2.87–13.9 | 1 × 10−6 |
Abbreviations: SARS-CoV-2, severe acute respiratory syndrome coronavirus 2; Hf, haplotype frequency; p, p-value. The order of the polymorphisms in the haplotypes is according to the positions in the chromosome 5′UTR region (rs651007, rs579459, rs495828), and coding region (rs8176746, rs8176740, and rs512770).
Association of the ABO gene SNPs with biochemical damage markers in the COVID-19 patients.
|
| rs8176740 | |||
|---|---|---|---|---|
| Genotype ( |
|
|
| |
| Parameters | ||||
| Creatinine (mg/dL) | 1.08 ± 0.83 | 1.64 ± 3.14 | 1.44 ± 1.94 | 0.292 |
| Ferritin (ng/μL) | 682.6 ± 1762.1 | 885.3 ± 1861.4 | 788.3 ± 791 | 0.509 |
| LDH (U/dL) | 313 ± 184.3 | 378 ± 803.8 | 355 ± 193.1 | 0.689 |
| C reactive protein (mg/dL) | 49.3 ± 78.9 | 67.2 ± 102.9 | 73 ± 102.8 | 0.247 |
| Total bilirubin (mg/dL) | 0.86 ± 0.82 | 0.81 ± 0.79 | 1.32 ± 2.69 | 0.059 * |
| ALT (U/dL) | 44.8 ± 35.1 | 59.10 ± 92.8 | 54.9 ± 46.1 | 0.383 |
| AST (U/dL) | 42.6 ± 24.8 | 56.3 ± 92.6 | 50.8 ± 33.2 | 0.340 |
| Hemoglobin (g/dL) | 13.6 ± 2.74 | 13.7 ± 2.94 | 13.4 ± 2.98 | 0.741 |
| Platelets (103/μL) | 262.5 ± 113.6 | 257.8 ± 106 | 295.2 ± 135.2 | 0.033 α |
| Heart rate | 86.4 ± 16.9 | 88.3 ± 18.7 | 87.7 ± 20.7 | 0.765 |
| Temperature °C | 36.3 ± 1.37 | 36.7 ± 0.79 | 36.6 ± 0.88 | 0.172 |
| Oxygen saturation (SpO2) | 88.4 ± 12.4 | 89.3 ± 8.96 | 87.9 ± 11.2 | 0.576 |
|
|
|
| ||
| Genotype ( |
|
|
| |
| Parameters | ||||
| Creatinine (mg/dL) | 1.64 ± 2.58 | 1.52 ± 2.75 | 1.00 ± 0.65 | 0.210 |
| Ferritin (ng/μL) | 752.7 ± 780.8 | 861.0 ± 1808.5 | 752.3 ± 1823.3 | 0.832 |
| LDH (U/dL) | 337.6 ± 184.5 | 383.6 ± 792 | 324 ± 236.4 | 0.687 |
| C reactive protein (mg/dL) | 71.7 ± 95.9 | 66.6 ± 107.6 | 50.9 ± 76.4 | 0.366 |
| Total bilirubin (mg/dL) | 1.24 ± 2.66 | 0.88 ± 0.96 | 0.85 ± 0.81 | 0.225 |
| ALT (U/dL) | 53.6 ± 46.4 | 56.5 ± 91.6 | 51.1 ± 37.9 | 0.866 |
| AST (U/dL) | 48.9 ± 34.1 | 54.9 ± 89.5 | 47.5 ± 36.5 | 0.691 |
| Hemoglobin (g/dL) | 13.2 ± 3.03 | 13.8 ± 2.79 | 13.9 ± 2.85 | 0.213 |
| Platelets (103/μL) | 281.0 ± 127.5 | 262.8 ± 109.5 | 272.2 ± 123.2 | 0.474 |
| Heart rate | 86.4 ± 19.9 | 88.6 ± 20.8 | 87.4 ± 15.4 | 0.683 |
| Temperature °C | 36.5 ± 1.33 | 36.7 ± 0.79 | 36.5 ± 0.81 | 0.144 |
| Oxygen saturation (SpO2) | 88.5 ± 9.1 | 88.1 ± 11.4 | 89.7 ± 10.7 | 0.559 |
Abbreviations: LDH = lactic acid dehydrogenase, ALT = aminotransferase alanine, AST = aminotransferase aspartate. Data for creatinine, ferritin, LDH, CRP, total bilirubin, ALT, AST, hemoglobin, and platelets are expressed as mean ± SD.* Moderate increased total bilirubin (p > 0.05). α High concentration of platelets (p < 0.05).