| Literature DB >> 35449150 |
Neveen A Hussein1, Mona M Rashad2, Azza S Abdou3, Amr M Hussein4, Hagar M Mohamed2.
Abstract
Even with considerable progress in cancer researches, gastric cancer is still one of the global health problems. Recognition of the differential expressed genes in GC is the most appropriate approach for establishing new diagnostic targets. This study evaluates SEC13, SMAD7, GHRL, lncRNA GHRLOS, HIF-1α genes profiling as well as HIF-1α protein level for GC. The expression of selected genes, serum HIF-1α and CEA protein levels were determined for 50 GC patients and 50 healthy controls by real-time RT-PCR, ELISA, and ELICA respectively. The sensitivities of these parameters as diagnostic biomarkers were evaluated. SMAD7, HIF-1α expression, serum HIF-1α, and CEA level were significantly upregulated in GC patients as compared to the control group (P = 0.024, < 0.001) and had significant positive correlations between each other except SMAD7 with serum HIF-1α, and CEA level. On the other hand, SEC13, GHRL, and lncRNA GHRLOS expression were significantly downregulated in GC patients (P = < 0.001, 0.025, < 0.001 respectively) and had significant positive correlations with each other (P < 0.001). Significant negative correlations were observed between most of both groups. All studied parameters were associated with GC clinical stages except SMAD7 was associated with stage IV only (P = 0.005) and GHRL did not associate with tumor stages (P ˃ 0.05). All studied parameters may be promising biomarkers for the early diagnosis of GC. SMAD7, HIF-1α gene, and HIF-1α protein may be jointly implicated in cancer development and prognosis, while SEC13, GHRL, and lncRNA GHRLOS may act as tumor suppressors.Entities:
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Year: 2022 PMID: 35449150 PMCID: PMC9023477 DOI: 10.1038/s41598-022-10402-w
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.996
Clinicopathological characteristics of gastric cancer patients.
| Gastric cancer patients (n = 50) | ||
|---|---|---|
| No | % | |
| < 50 | 4 | 8.0 |
| ≥ 50 | 46 | 92.0 |
| Female | 23 | 46 |
| Male | 27 | 54 |
| II | 5 | 10.0 |
| III | 17 | 34.0 |
| IV | 28 | 56.0 |
| II | 13 | 26.0 |
| III | 37 | 74.0 |
| < 5 | 17 | 34.0 |
| > 5 | 33 | 66.0 |
| Normal | 9 | 18.0 |
| Elevated | 41 | 82.0 |
| No | 20 | 40.0 |
| Yes | 30 | 60.0 |
| No | 15 | 30.0 |
| Yes | 35 | 70.0 |
| Intestinal | 5 | 10.0 |
| Diffused | 45 | 90.0 |
n: number of cases.
SEC13, GHRL, lncRNA GHRLOS, SMAD7, HIF-1α genes expression, serum HIF-1α (ng/ml) and CEA level (ng/ml) in control and gastric cancer patients' groups.
| Control (n = 50) | Gastric cancer patients (n = 50) | |
|---|---|---|
| 4.50 ± 12.12 | 0.34 ± 0.42 | < 0.001* |
| 0.72 (0.28–2.7) | 0.18 (0.12–0.33) | |
| 4.87 ± 7.48 | 1.32 ± 3.40 | 0.025* |
| 0.51 (0.20–6.0) | 0.34 (0.11–0.78) | |
| 3.28 ± 7.74 | 0.11 ± 0.52 | < 0.001* |
| 0.88 (0.49–1.60) | 0.17 (0.09–0.78) | |
| 4.48 ± 8.60 | 5.36 ± 12.04 | 0.024* |
| 0.56 (0.28–3.6) | 1.56 (0.59–5.20) | |
| 3.81 ± 6.56 | 5.60 ± 6.40 | < 0.001* |
| 0.65 (0.24–5.39) | 4.81 (1.37–7.21) | |
| 17.64 ± 4.12 | 191.6 ± 43.94 | < 0.001* |
| 19.10 (16.60–20.40) | 198.7 (167.0–224.2) | |
| 2.93 ± 1.01 | 71.77 ± 45.91 | < 0.001* |
| 3.02 (2.20–3.60) | 84.50 (37.0–97.0) | |
Mean ± S.D. and Median (IQR).
n: number of cases.
P: P value for comparing between GC patients and control group utilizing Mann Whitney test.
*Significance at P ≤ 0.05.
Correlation between SEC13, GHRL, lncRNA GHRLOS, SMAD7, HIF-1α genes expression, serum HIF-1α and CEA levels in gastric cancer patients' group.
| GHRL | LncRNA GHRLOS | SMAD7 | HIF-1α | CEA protein | HIF-1α protein | |
|---|---|---|---|---|---|---|
| rs | 0.378 | 0.672 | − 0.200 | − 0.258 | − 0.418 | − 0.473 |
| < 0.001* | < 0.001* | 0.046* | 0.015* | < 0.001* | < 0.001* | |
| rs | 0.397 | 0.162 | − 0.254 | − 0.147 | − 0.248 | |
| < 0.001* | 0.107 | 0.011* | 0.144 | 0.013* | ||
| rs | − 0.146 | − 0.180 | − 0.644 | − 0.715 | ||
| 0.147 | 0.074 | < 0.001* | < 0.001* | |||
| rs | 0.710 | 0.169 | 0.177 | |||
| < 0.001* | 0.093 | 0.078 | ||||
| rs | 0.329 | 0.349 | ||||
| < 0.001* | < 0.001* | |||||
| rs | 0.665 | |||||
| < 0.001* | ||||||
rs: Spearman coefficient.
SEC13, GHRL, lncRNA GHRLOS, SMAD7, HIF-1α genes expression, serum HIF-1α and CEA levels in control and gastric cancer patients' groups with different stages.
| Control (n = 50) | Gastric cancer patients (n = 50) | |||
|---|---|---|---|---|
| Stage II (n = 5) | Stage III (n = 17) | Stage IV (n = 28) | ||
| 4.50 ± 12.12 | 0.28 ± 0.32* | 0.33 ± 0.30* | 0.35 ± 0.50* | < 0.001* |
| 0.72 | 0.14 | 0.18 | 0.27 | |
| 4.87 ± 7.48 | 0.40 ± 0.47 | 1.10 ± 2.55 | 1.61 ± 4.10 | 0.132 |
| 0.51 | 0.15 | 0.32 | 0.39 | |
| 3.28 ± 7.74 | 0.11 ± 0.21* | 0.26 ± 0.88* | 0.03 ± 0.06* | < 0.001* |
| 0.88 | 0.09 | 0.15 | 0.02 | |
| 4.48 ± 8.60 | 6.93 ± 5.98 | 1.47 ± 1.71 | 7.45 ± 15.53* | 0.013* |
| 0.56 | 5.72 | 0.95 | 7.57 | |
| 3.81 ± 6.56 | 3.76 ± 3.33* | 4.61 ± 4.35* | 13.65 ± 16.17* | 0.001* |
| 0.65 | 3.13 | 3.46 | 6.73 | |
| 17.64 ± 4.12 | 191.52 ± 35.47* | 180.85 ± 40.32* | 198.14 ± 47.31* | < 0.001* |
| 19.1 | 175.6 | 179.8 | 205.5 | |
| 2.93 ± 1.01 | 49.28 ± 47.22* | 70.22 ± 44.48* | 73.09 ± 47.06* | < 0.001* |
| 3.02 | 45 | 85 | 85 | |
P: P value for comparing between all groups utilizing Kruskal Wallis test, pairwise comparison between each two groups was performed by Post Hoc Test.
*Significance at P ≤ 0.05.
Figure 1SEC13, GHRL, lncRNA GHRLOS, SMAD7, HIF-1α expression, serum HIF-1α (ng/ml) and CEA levels (ng/ml) in control and gastric cancer patient groups with different stage.
Diagnostic accuracy of SEC13, GHRL, lncRNA GHRLOS, SMAD7, HIF-1α genes expression, serum HIF-1α and CEA levels.
| AUC | Cut off# | Sensitivity | Specificity | 95% CI | PPV | NPV | Accuracy | ||
|---|---|---|---|---|---|---|---|---|---|
| SEC13 | 0.816 | ≤ 0.389 | 80.0 | 72.0 | 0.734 –0.898 | 74.1 | 78.3 | 76.0 | < 0.001* |
| GHRL | 0.630 | ≤ 0.390 | 60.0 | 58.0 | 0.521 –0.739 | 58.8 | 59.2 | 59.0 | 0.026* |
| LncRNA GHRLOS | 0.968 | ≤ 0.030 | 90.0 | 98.0 | 0.930 –1.000 | 97.8 | 90.7 | 94.0 | < 0.001* |
| SMAD7 | 0.631 | > 0.752 | 70.0 | 62.0 | 0.518 –0.743 | 64.8 | 67.4 | 66.0 | 0.024* |
| HIF-1α | 0.724 | > 0.895 | 84.0 | 68.0 | 0.617 –0.831 | 72.4 | 81.0 | 76.0 | < 0.001* |
| HIF-1α protein | 1.000 | > 2.180 | 100.0 | 100.0 | 1.000 –1.000 | 100.0 | 100.0 | 100.0 | < 0.001* |
| CEA protein | 0.961 | > 3.980 | 92.0 | 90.0 | 0.926 –0.996 | 90.2 | 91.8 | 91.0 | < 0.001* |
CI: Confidence intervals, AUC: area under the curve, PPV: positive predictive value, NPV: negative predictive value.
*Statistically significant at P ≤ 0.05.
#Cut off was choose according to Youden index.
Figure 2ROC curve for (I) SEC13, GHRL, lncRNA GHRLOS, SMAD7, HIF-1α genes and serum CEA, (II) serum HIF-1α and CEA.