Literature DB >> 35444316

Evaluating ribosomal frameshifting in CCR5 mRNA decoding.

Yousuf A Khan1,2, Gary Loughran3, Anna-Lena Steckelberg4,5, Katherine Brown1, Stephen J Kiniry3, Hazel Stewart1, Pavel V Baranov3, Jeffrey S Kieft6, Andrew E Firth7, John F Atkins8,9.   

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Year:  2022        PMID： 35444316      PMCID： PMC9248028          DOI： 10.1038/s41586-022-04627-y

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   69.504


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  14 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  A dual-luciferase reporter system for studying recoding signals.

Authors:  G Grentzmann; J A Ingram; P J Kelly; R F Gesteland; J F Atkins
Journal:  RNA       Date:  1998-04       Impact factor: 4.942

Review 3.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

4.  Mammalian microRNAs predominantly act to decrease target mRNA levels.

Authors:  Huili Guo; Nicholas T Ingolia; Jonathan S Weissman; David P Bartel
Journal:  Nature       Date:  2010-08-12       Impact factor: 49.962

5.  Interferon-γ regulates cellular metabolism and mRNA translation to potentiate macrophage activation.

Authors:  Xiaodi Su; Yingpu Yu; Yi Zhong; Eugenia G Giannopoulou; Xiaoyu Hu; Hui Liu; Justin R Cross; Gunnar Rätsch; Charles M Rice; Lionel B Ivashkiv
Journal:  Nat Immunol       Date:  2015-06-29       Impact factor: 25.606

6.  Ribosomal frameshifting in the CCR5 mRNA is regulated by miRNAs and the NMD pathway.

Authors:  Ashton Trey Belew; Arturas Meskauskas; Sharmishtha Musalgaonkar; Vivek M Advani; Sergey O Sulima; Wojciech K Kasprzak; Bruce A Shapiro; Jonathan D Dinman
Journal:  Nature       Date:  2014-07-09       Impact factor: 49.962

7.  Cell cycle control (and more) by programmed -1 ribosomal frameshifting: implications for disease and therapeutics.

Authors:  Ashton T Belew; Jonathan D Dinman
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

8.  Trips-Viz: a transcriptome browser for exploring Ribo-Seq data.

Authors:  Stephen J Kiniry; Patrick B F O'Connor; Audrey M Michel; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

9.  Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.

Authors:  Nuala A O'Leary; Mathew W Wright; J Rodney Brister; Stacy Ciufo; Diana Haddad; Rich McVeigh; Bhanu Rajput; Barbara Robbertse; Brian Smith-White; Danso Ako-Adjei; Alexander Astashyn; Azat Badretdin; Yiming Bao; Olga Blinkova; Vyacheslav Brover; Vyacheslav Chetvernin; Jinna Choi; Eric Cox; Olga Ermolaeva; Catherine M Farrell; Tamara Goldfarb; Tripti Gupta; Daniel Haft; Eneida Hatcher; Wratko Hlavina; Vinita S Joardar; Vamsi K Kodali; Wenjun Li; Donna Maglott; Patrick Masterson; Kelly M McGarvey; Michael R Murphy; Kathleen O'Neill; Shashikant Pujar; Sanjida H Rangwala; Daniel Rausch; Lillian D Riddick; Conrad Schoch; Andrei Shkeda; Susan S Storz; Hanzhen Sun; Francoise Thibaud-Nissen; Igor Tolstoy; Raymond E Tully; Anjana R Vatsan; Craig Wallin; David Webb; Wendy Wu; Melissa J Landrum; Avi Kimchi; Tatiana Tatusova; Michael DiCuccio; Paul Kitts; Terence D Murphy; Kim D Pruitt
Journal:  Nucleic Acids Res       Date:  2015-11-08       Impact factor: 16.971

10.  GWIPS-viz: 2018 update.

Authors:  Audrey M Michel; Stephen J Kiniry; Patrick B F O'Connor; James P Mullan; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971
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  4 in total

Review 1.  Phenotypic mutations contribute to protein diversity and shape protein evolution.

Authors:  Maria Luisa Romero Romero; Cedric Landerer; Jonas Poehls; Agnes Toth-Petroczy
Journal:  Protein Sci       Date:  2022-09       Impact factor: 6.993

Review 2.  Abracadabra, One Becomes Two: The Importance of Context in Viral -1 Programmed Ribosomal Frameshifting.

Authors:  Wesley D Penn; Suchetana Mukhopadhyay
Journal:  mBio       Date:  2022-06-23       Impact factor: 7.786

3.  CGG repeats trigger translational frameshifts that generate aggregation-prone chimeric proteins.

Authors:  Shannon E Wright; Caitlin M Rodriguez; Jeremy Monroe; Jiazheng Xing; Amy Krans; Brittany N Flores; Venkatesha Barsur; Magdalena I Ivanova; Kristin S Koutmou; Sami J Barmada; Peter K Todd
Journal:  Nucleic Acids Res       Date:  2022-08-26       Impact factor: 19.160

4.  Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding.

Authors:  Gary Loughran; Alla D Fedorova; Yousuf A Khan; John F Atkins; Pavel V Baranov
Journal:  Mol Cell       Date:  2022-09-16       Impact factor: 19.328
  4 in total

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