| Literature DB >> 35441073 |
Azimah Ismail1, Mohd Salami Ibrahim2, Samhani Ismail2, Azwa Abdul Aziz3, Harmy Mohamed Yusoff2, Mokhairi Mokhtar3, Hafizan Juahir1.
Abstract
COVID-19 has triggered a global health crisis. Death from severe respiratory failure and symptoms, including fever, dry cough, sore throat, anosmia, and gastrointestinal disturbances, has been attributed to the disease. Development of screening and diagnosis methods prove to be challenging due to shared clinical features between COVID-19 and other pathologies, such as Middle Eastern respiratory syndrome, severe acute respiratory syndrome, and common colds. This study aims to develop a comprehensive one-stop online public health screening system based on clinical and epidemiological criteria. The immediate target populations are the university students and staff of University Sultan Zainal Abidin and the civil servants of the Malaysian Ministry of Science, Technology, and Innovation. Forty-nine (49) clinical and epidemiological factors associated with COVID-19 were identified and prioritized based on their prevalence via rigorous review of the literature and vetting sessions. A pilot study of 200 volunteers was conducted to assess the extent of risk mitigation of COVID-19 infection among the university students and civil servants using the prototyped model. Consequently, twelve (12) clinical parameters were identified and validated by the medical experts as essential variables for COVID-19 risk-screening. The updated model was then revalidated via real mass-screening of 5000 resulting in the final adopted CHaSe system. Principal component analysis (PCA) was used to confirm the weightage of risk level toward COVID-19 to procures the optimal accuracy, reliability, and efficiency of this system. Twelve (12) factor loadings accountable for 58.287% of the clinical symptoms and clinical history variables with forty-nine (49) parameters of COVID-19 were identified through PCA. The variables of the clinical and epidemiological aspects identified are the C6 (History of joining high-risk gathering (where confirmed cases had been recorded), CH11 [History of contact with confirmed cases (close contact)], CH13 [Duration of exposure with confirmed cases (minutes)] with substantial positive factors of 0.7053, 0.706 and 0.5086, respectively. The contribution toward high-risk infection of COVID-19 was firmly attributable to the variables CH14 [Last contact with confirmed cases (days)], CH13 [Duration of exposure with confirmed cases (minutes)], and S1 (Age). The revalidated PCA for 5000 respondents also yielded twelve significant PCs with a cumulative variance of 58.288%. Importantly, the medical experts have revalidated the CHaSe system for accuracy of all clinical aspects (clinical symptoms and clinical history) and epidemiological links to COVID-19 infection. After revalidating the model for 5000 respondents, the PC variance for PC1, PC2, PC3, and PC4 was 27.36%, 11.79%, 10.347%, and 8.785%, respectively, with the cumulative explanation of 58.288% in data variability. The level of risks detected using the CHaSe system toward COVID-19 provides optimal accuracy, reliability, and efficiency to conduct mass-screening of students and government servants for COVID-19 infection.Entities:
Keywords: Coronavirus; Multivariate analysis; Pandemics; Risk assessment
Year: 2022 PMID: 35441073 PMCID: PMC9010706 DOI: 10.1007/s13721-022-00357-3
Source DB: PubMed Journal: Netw Model Anal Health Inform Bioinform ISSN: 2192-6670
Fig. 1A fishbone diagram illustrating the cause and effect of COVID-19 outbreak in Malaysia
Forty-Nine (49) parameters or variables used for pilot study based on literature reviews
| No | Section | Var | Description |
|---|---|---|---|
| 1 | Sociodemographic | S1 | Age (Years) |
| 2 | S2 | Gender | |
| 3 | S3 | Race | |
| 4 | S4 | Place of living (State) | |
| 5 | S5 | Type of residency | |
| 6 | S6 | Locality | |
| 7 | S7 | Occupation | |
| 8 | S8 | At risk occupation | |
| 9 | Clinical history | CH1 | Use of mask |
| 10 | CH2 | Use of sanitizer | |
| 11 | CH3 | Practice of Social Distancing (More than 1 m apart) | |
| 12 | CH4 | History of involving with mass gathering of more than 50 people since last two weeks | |
| 13 | CH5 | History of family members/co-workers involved with mass gathering of more than 50 people since last two weeks | |
| 14 | CH6 | History of joining high-risk gathering (where confirmed cases had been recorded) | |
| 15 | CH7 | History of Visit to any Clinic or Hospital | |
| 16 | CH8 | International Travel History | |
| 17 | CH9 | ***Dynamic Variable—Travel to and from high-density state | |
| 18 | CH10 | ***Dynamic Variable—Travel to and from high-density countries | |
| 19 | CH11 | History of contact with confirmed cases (Close contact) | |
| 20 | CH12 | History of contact with close contacts (Casual contacts) | |
| 21 | CH13 | Duration of exposure with confirmed cases (in minutes) | |
| 22 | CH14 | Last contact with confirmed cases (in days) | |
| 23 | Clinical symptom | CS1 | Fever |
| 24 | CS2 | Duration of fever (Days) | |
| 25 | CS3 | Dry Cough | |
| 26 | CS4 | Duration of dry cough (Days) | |
| 27 | CS5 | Productive cough | |
| 28 | CS6 | Runny nose | |
| 29 | CS7 | Sore throats | |
| 30 | CS8 | difficulty breathing | |
| 31 | CS9 | Duration of difficulty breathing (Days) | |
| 32 | CS10 | Muscle pain/fatigue | |
| 33 | CS11 | Duration of muscle pain/fatigue (Days) | |
| 34 | CS12 | Vomiting | |
| 35 | CS13 | Diarrhea | |
| 36 | CS14 | Conjunctival congestion | |
| 37 | CS15 | Headache | |
| 38 | CS16 | Abdominal Pain | |
| 39 | Comorbidity | Com1 | Diabetes |
| 40 | Com2 | Hypertension | |
| 41 | Com3 | Ischemic Heart Disease | |
| 42 | Com4 | Malignancy | |
| 43 | Com5 | Heart Failure | |
| 44 | Com6 | Respiratory disease (e.g., asthma, COPD, bronchiolitis etc.) | |
| 45 | Com7 | Smokers | |
| 46 | Com8 | Renal Disease | |
| 47 | Com9 | Low Immunity (e.g., HIV, on long-term steroid, on chemotherapy, on immunospressant etc.) | |
| 48 | Com10 | Stroke/TIA | |
| 49 | Com11 | Chronic Liver Disease |
Eigenvalues from the principal component analysis illustrating variance, cumulative variance, and factor loading of clinical aspects (clinical symptoms and clinical history) and epidemiological link of COVID-19 (Epid-Link) after varimax rotation of 49 parameters for 200 respondents
| Variables | D1 | D2 | D3 | D4 |
|---|---|---|---|---|
| S1 | − 0.0708 | 0.0048 | 0.0792 | |
| CH6 | − 0.0134 | 0.2743 | − 0.0641 | |
| CH11 | − 0.0200 | 0.0481 | 0.1781 | |
| CH13 | 0.1669 | − 0.4748 | 0.0440 | |
| CS1 | 0.2254 | − 0.2029 | 0.1917 | |
| CS3 | − 0.0850 | 0.0203 | 0.0985 | |
| CS7 | 0.2782 | 0.0693 | 0.1802 | |
| CS8 | 0.0910 | 0.3343 | 0.1951 | |
| CS11 | 0.4444 | 0.3305 | 0.2784 | 0.3701 |
| CS12 | 0.1517 | 0.0804 | 0.1469 | |
| CS15 | 0.4632 | − 0.1151 | 0.2089 | 0.4913 |
| Com2 | 0.4183 | 0.2133 | − 0.2155 |
The factor loadings from 0.4 and above are considered strong (highlighted in bold)
Fig. 2Variance explanation of the strong factor loadings of 27.36% for PC1 and 11.794% for PC2 after varimax rotation of 49 parameters for 200 respondents
Confusion Matrix of DA (Standard Step Wise and Forward Step Wise) validating the percentage correction of the risk indices
| Index scale | Predicted Index Scale | Total | % correct | ||
|---|---|---|---|---|---|
| High risk | Low risk | Moderate risk | |||
| DA standard step wise | |||||
| High risk | 60 | 4 | 1 | 65 | 92.31% |
| Low risk | 0 | 114 | 0 | 114 | 100.00% |
| Moderate risk | 0 | 0 | 21 | 21 | 100.00% |
| Total | 60 | 118 | 22 | 200 | 97.50% |
| DA forward step wise | |||||
| High risk | 39 | 15 | 6 | 60 | 65.00% |
| Low risk | 2 | 116 | 0 | 118 | 98.31% |
| Moderate risk | 1 | 0 | 21 | 22 | 95.45% |
| Total | 42 | 131 | 27 | 200 | 88.00% |
Fig. 3a DA Standard step mode. b DA Forward step mode of COVID-19 for 200 respondents
List of Questionnaire distributed to University students and staff
| No. | Category | Variables |
|---|---|---|
| 1 | Clinical history | History of joining high-risk gathering (where confirmed cases had been recorded) |
| 2 | Clinical history | History of contact with confirmed cases (Close contact) |
| 3 | Clinical history | Duration of exposure with confirmed cases (in minutes) |
| 4 | Clinical symptoms | Fever |
| 5 | Clinical symptoms | Dry cough |
| 6 | Clinical symptoms | Sore throats |
| 7 | Clinical symptoms | Difficulty breathing |
| 8 | Clinical symptoms | Muscle pain/fatigue |
| 9 | Clinical symptoms | Vomiting |
| 10 | Clinical symptoms | Headache |
| 11 | Co-morbidities | Diabetes |
| 12 | Co-Morbidities | Hypertension |
| 13 | Co-morbidities | Ischemic Heart Disease |
| 14 | Co-morbidities | Heart failure |
| 15 | Co-morbidities | Respiratory disease (e.g., asthma, COPD, bronchiolitis etc.) |
| 16 | Co-morbidities | Stroke/TIA |
Fig. 4Variance explanation of the strong factor loadings of 27.36% for PC1 and 11.79% for PC2 after varimax rotation of 11 parameters for 5000 respondents
Fig. 5The development of Chase System with the integration of raw data (clinical aspects, data analytics, and modeling
Fig. 6a DA standard stepwise mode of the pilot study for 200 respondents, and b DA stepwise forward mode of the pilot study for 200 respondents
Eigenvalues from the principal component analysis illustrating variance, cumulative variance, and factor loading of clinical aspects (clinical symptoms and clinical history) and Epid-Link after varimax rotation of 11 parameters for 5000 respondents
| Variables | D1 | D2 | D3 | D4 |
|---|---|---|---|---|
| S1 | − 0.071 | 0.848 | 0.005 | 0.079 |
| CH6 | 0.705 | − 0.013 | 0.274 | − 0.064 |
| CH11 | 0.707 | − 0.020 | 0.048 | 0.178 |
| CH13 | 0.509 | 0.167 | − 0.475 | 0.044 |
| CS1 | 0.225 | − 0.203 | 0.646 | 0.192 |
| CS3 | − 0.085 | 0.020 | 0.099 | 0.851 |
| CS7 | 0.278 | 0.069 | 0.180 | 0.682 |
| CS8 | 0.091 | 0.334 | 0.706 | 0.195 |
| CS11 | 0.444 | 0.330 | 0.278 | 0.370 |
| CS12 | 0.152 | 0.080 | 0.672 | 0.147 |
| CS15 | 0.463 | − 0.115 | 0.209 | 0.491 |
| Com2 | 0.418 | 0.558 | 0.213 | − 0.215 |
Weightage Scoring of 200 respondents (pilot study) and 5000 respondents (actual data) of the development of CHaSe System
| No | Section | Var | Description | Scoring | ||||
|---|---|---|---|---|---|---|---|---|
| Model-49 V | Model-11 V | Model-9 V | Model-11VR | Model-9VR | ||||
| 1 | Sociodemographic | S1 | Age (Years) | |||||
| 2 | S2 | Gender | ||||||
| 3 | S3 | Race | ||||||
| 4 | S4 | Place of living (State) | ||||||
| 5 | S5 | Type of residency | ||||||
| 6 | S6 | Locality | ||||||
| 7 | S7 | Occupation | ||||||
| 8 | S8 | At risk occupation | ||||||
| 9 | Clinical history | CH1 | Use of mask | 0.8088161 | ||||
| 10 | CH2 | Use of sanitizer | 0.8327972 | |||||
| 11 | CH3 | Practice of social distancing (More than 1 m apart) | 0.750417 | |||||
| 12 | CH4 | History of involving with mass gathering of more than 50 people since last two weeks | 0.5660143 | |||||
| 13 | CH5 | History of family members/co-workers involved with mass gathering of more than 50 people since last two weeks | 0.7675449 | |||||
| 14 | CH6 | History of joining high-risk gathering (where confirmed cases had been recorded) | 0.4602594 | 9.788 | 11.213 | 0.69670113 | 0.6113535 | |
| 15 | CH7 | History of Visit to any Clinic or Hospital | 0.5890887 | |||||
| 16 | CH8 | International Travel History | 0.5732973 | |||||
| 17 | CH9 | ***Dynamic Variable—Travel to and from high-density state | ||||||
| 18 | CH10 | ***Dynamic Variable—Travel to and from high-density countries | 0.7130434 | |||||
| 19 | CH11 | History of contact with confirmed cases (Close contact) | 0.703928 | 10.06 | 0.83649972 | |||
| 20 | CH12 | History of contact with close contacts (Casual contacts) | 0.6710848 | |||||
| 21 | CH13 | Duration of exposure with confirmed cases (in minutes) | 0.7170683 | 6.827 | 0.70039132 | |||
| 22 | CH14 | Last contact with confirmed cases (in days) | 0.7552337 | |||||
| 23 | Clinical symptom | CS1 | Fever | 0.8420126 | 8.702 | 11.669 | 0.53846818 | 0.6375996 |
| 24 | CS2 | Duration of fever (Days) | 0.8713695 | |||||
| 25 | CS3 | Dry Cough | 0.824329 | 4.991 | 6.708 | 0.46676926 | 0.5974462 | |
| 26 | CS4 | Duration of dry cough (Days) | 0.8714863 | |||||
| 27 | CS5 | Productive cough | 0.3378407 | |||||
| 28 | CS6 | Runny nose | 0.7992252 | |||||
| 29 | CS7 | Sore throats | 0.5241973 | 9.122 | 11.862 | 0.59975037 | 0.5819468 | |
| 30 | CS8 | Difficulty breathing | 0.4738243 | 9.906 | 14.113 | 0.58112963 | 0.6294568 | |
| 31 | CS9 | Duration of difficulty breathing (Days) | 0.6155505 | |||||
| 32 | CS10 | Muscle pain/fatigue | 0.4471942 | 8.146 | 11.732 | 0.58942573 | 0.5798006 | |
| 33 | CS11 | Duration of muscle pain/fatigue (Days) | 0.3949501 | |||||
| 34 | CS12 | Vomiting | 0.7388543 | |||||
| 35 | CS13 | Diarrhea | 0.6960631 | |||||
| 36 | CS14 | Conjunctival congestion | 0.4245814 | |||||
| 37 | CS15 | Headache | 0.3963389 | 9.057 | 11.446 | 0.75070043 | 0.4475942 | |
| 38 | CS16 | Abdominal pain | 0.6446945 | |||||
| 39 | Comorbidity | Com1 | Diabetes | − 0.5719882 | ||||
| 40 | Com2 | Hypertension | 0.4040926 | 7.807 | 10.443 | 0.59859511 | 0.6292796 | |
| 41 | Com3 | Ischemic heart disease | 0.7606792 | |||||
| 42 | Com4 | Malignancy | 0.7835047 | |||||
| 43 | Com5 | Heart failure | 0.6845714 | |||||
| 44 | Com6 | Respiratory disease (e.g., asthma, COPD, bronchiolitis, etc.) | 0.6232216 | 7.691 | 10.388 | 0.62548257 | 0.5671423 | |
| 45 | Com7 | Smokers | 0.4397769 | |||||
| 46 | Com8 | Renal disease | 0.5377361 | |||||
| 47 | Com9 | Low Immunity (e.g., HIV, on long-term steroid, on chemotherapy, on immunospressant, etc.) | 0.7867499 | |||||
| 48 | Com10 | Stroke/TIA | 0.6253828 | |||||
| 49 | Com11 | Chronic liver disease | 0.6650013 | |||||
Model-49V represents the modeling of initial forty-nine (49) variables based on literature review, whereas Model-11V and Model-9V represent eleven and nine variables based on actual 5000 respondents. Both Model-11VR and Model-9VR were also based on 5000 respondents, but the front liners medical expert revalidated the model to procure the optimal accuracy, reliability, and efficiency of the CHaSe system.
Fig. 7a A self-monitoring CHaSe System of COVID-19 for health closed-surveillance of individuals. b A COVID-19 closed-surveillance monitored by the administration embedded in CHaSe System
Fig. 8Visual data of COVID-19 outbreaks, comprising of risk trend over time, risk level in entire Malaysia and risk by states