| Literature DB >> 35433485 |
Xing Wang1, Jia-Jun Qiu2, Chun-Lu Tan1, Yong-Hua Chen1, Qing-Quan Tan1, Shu-Jie Ren1, Fan Yang3, Wen-Qing Yao4, Dan Cao5, Neng-Wen Ke1, Xu-Bao Liu1.
Abstract
Backgroud: Tumor grade is the determinant of the biological aggressiveness of pancreatic neuroendocrine tumors (PNETs) and the best current tool to help establish individualized therapeutic strategies. A noninvasive way to accurately predict the histology grade of PNETs preoperatively is urgently needed and extremely limited.Entities:
Keywords: CT; pancreas; pancreatic neuroendocrine tumor; radiomics; tumor grade
Year: 2022 PMID: 35433485 PMCID: PMC9008322 DOI: 10.3389/fonc.2022.843376
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Comparison of patient and lesion features between grades 1 and 2/3 groups in training and validation sets.
| Features | Training set ( |
| Validation set ( |
| ||
|---|---|---|---|---|---|---|
| Grade 2/3 ( | Grade 1 ( | Grade 2/3 ( | Grade 1 ( | |||
| Age(range, years) | 49.7 (20–77) | 49.2 (24–70) | 0.883 | 52 (22–77) | 53.2 (16–75) | 0.799 |
|
| 0.141 | |||||
|
| 27 (49.1) | 9 (32.1) | 10 (27) | 5 (26.3) | 0.955 | |
|
| 28 (50.9) | 19 (67.9) | 27 (73) | 14 (73.7) | ||
| Tumor size (range, mm) | 40.7 (12–150) | 28.4 (10–80) |
| 47.7 (12–180) | 22.2 (12–42) |
|
|
| 28 (50.9) | 5 (17.9) |
| 23 (62.2) | Nil |
|
|
| 31 (56.4) | 5 (17.9) |
| 25 (67.6) | 1 (5.3) |
|
|
| 19 (34.5) | 3 (10.7) |
| 14 (37.8) | Nil |
|
|
|
|
| ||||
|
| 30 (54.5) | 23 (82.1) | 24 (64.9) | 18 (94.7) | ||
|
| 25 (45.5) | 5 (17.9) | 13 (35.1) | 1 (5.3) | ||
|
| 0.502 | 0.096 | ||||
|
| 29 (52.7) | 14 (50) | 20 (54.1) | 6 (31.6) | ||
|
| 26 (47.3) | 13 (46.4) | 14 (37.8) | 13 (68.4) | ||
|
| Nil | 1 (3.6) | 3 (8.1) | Nil | ||
|
| 0.175 | 0.080 | ||||
|
| 12 (21.8) | 10 (35.7) | 9 (24.3) | 9 (47.4) | ||
|
| 43 (78.2) | 18 (64.3) | 28 (75.7) | 10 (52.6) | ||
|
|
|
| ||||
|
| 5 (9.1) | 8 (28.6) | 4 (10.8) | 9 (47.4) | ||
|
| 50 (90.9) | 20 (71.4) | 33 (89.2) | 10 (52.6) | ||
The values indicated are expressed as median (range). bDilated MPD/BD, dialated main pancreatic duct (MPD) or bile duct (BD). The clinical TNM stage and T stage of the tumor was determined preoperatively according to the American Joint Committee on Cancer TNM Staging System Manual, 7th edition. The bold values in this table are p-value less than 0.05, which means the features between grade 1 and 2/3 groups are significantly different.
Figure 1Work flow of radiomic analysis.
Radiomic signature and clinical data.
| No. | Analysis method | Subband | Feature name |
|---|---|---|---|
|
| Fistogram | Variance | |
|
| Wavelet-COM | H1 | Maximal correlation coefficient |
|
| Wavelet-RLM | D1 | Short-run low gray-level emphasis |
|
| Wavelet-COM | D2 | Sum of squares |
|
| Contourlet-histogram | L2-1 | 1% percentile |
|
| Contourlet-COM | L2-2 | Cluster shade |
|
| Contourlet-histogram | L2-3 | 99% percentile |
|
| Contourlet-histogram | L1-2 | 90% percentile |
|
| T stage | ||
|
| Dilated MPD/BD | ||
|
| Clinical TNM stage | ||
|
| Tumor margin |
The radiomic signature are composed of x1 to x8. The clinical data in group 2 are composed of x9 and x10. The clinical data in group 3 are composed of x9 to x12. The number following A, H, V, or D represents the decomposition level. The clinical TNM and T stages of the tumor were determined preoperatively according to the American Joint Committee on Cancer TNM Staging System Manual, 7th edition.
COM, cooccurrence matrix; RLM, run-length matrix; A (in the wavelet transform), approximate; H (in the wavelet transform), horizontal; V (in the wavelet transform), vertical; D (in the wavelet transform), diagonal; Li–j, jth component in the ith decomposition in the contourlet transform; Dilated MPD/BD, dilated main pancreatic duct (MPD) or bile duct (BD).
Results of training and validation: plain (P), arterial (A), and venous (V); unless otherwise specified, the contents of parentheses are 95% confidence intervals.
| Features | Training set ( | Validation set ( |
|---|---|---|
|
| ||
| P | 0.911 (0.908–0.914) |
|
| A | 0.913 (0.909–0.917) | 0.710 (0.695–0.725) |
| V | 0.874 (0.869–0.879) | 0.625 (0.609–0.641) |
|
| ||
| P | 0.919 (0.916–0.922) |
|
| A | 0.895 (0.892–0.898) | 0.783 (0.770–0.796) |
| V | 0.900 (0.894–0.906) | 0.742 (0.729–0.755) |
|
| ||
| P | 0.895 (0.891–0.899) |
|
| A | 0.892 (0.889–0.895) | 0.828 (0.817–0.839) |
| V | 0.902 (0.898–0.906) | 0.797 (0.784–0.810) |
group 1: radiomic signature; group 2: radiomic signature combining T stage and Dilated MPD/BD; group 3: radiomic signature combining T stage, Dilated MPD/BD, clinical TNM stage, and tumor margin. In the training, we used the fivefold crossvalidation technique to calculate the average AUC, then randomly performed 50 fivefold crossvalidations to calculate the average AUC and the 95% confidence intervals. In the independent validation, the bootstrap method based on sampling with replacement was used to calculate the average AUC and the 95% confidence intervals (based on 100 bootstraps). The sampling with replacement randomly sampled one sample at a time and drawn 56 times. The clinical TNM and T stages of the tumor were determined preoperatively according to the American Joint Committee on Cancer TNM Staging System Manual, 7th edition. Dilated MPD/BD, dilated main pancreatic duct (MPD) or bile duct (BD). The bold values in this table showed the best performance in each group.
Figure 2Comparison of receiver operating characteristic (ROC) curves for prediction of the histologic grade. The positive class is grade 2/3; the negative class is grade 1. Subfigure (A–C) illustrate the training ROCs. Subfigures (D–F) illustrate the validation ROCs. In validations, we performed DeLong’s tests to compare two ROC curves. In (D), the DeLong’s tests show that the p-value between the ROC curve of group 3 and the ROC curve of group 1 is less than 0.066, the p-value between the ROC curve of group 3 and the ROC curve of group 2 is less than 0.629, and the p-value between the ROC curve of group 2 and the ROC curve of group 1 is less than 0.030. In subfigure (E), the DeLong’s tests show that the p-value between the ROC curve of group 3 and the ROC curve of group 1 is less than 0.003, the p-value between the ROC curve of group 3 and the ROC curve of group 2 is less than 0.037, and the p-value between the ROC curve of group 2 and the ROC curve of group 1 is less than 0.013. In (F), the DeLong’s tests show that the p-value between the ROC curve of group 3 and the ROC curve of group 1 is less than 0.001, the p-value between the ROC curve of group 3 and the ROC curve of group 2 is less than 0.059, and the p-value between the ROC curve of group 2 and the ROC curve of group 1 is less than 0.003.
Validation results based on plain phase as the threshold varied: accuracy (ACC, %), sensitivity (SEN, %), and specificity (SPE, %).
| Features | Threshold | ||||||
|---|---|---|---|---|---|---|---|
| 0.5 | 0.55 | 0.6 | 0.65 | 0.7 | 0.75 | 0.8 | |
| Group 1 | |||||||
| ACC | 75.0 | 75.0 | 76.8 | 78.6 | 78.6 |
| 76.8 |
| SEN | 83.8 | 83.8 | 83.8 | 81.1 | 78.4 |
| 73.0 |
| SPE | 57.9 | 57.9 | 63.2 | 73.7 | 78.9 |
| 84.2 |
| Group 2 | |||||||
| ACC | 75.0 | 78.6 | 82.1 |
| 80.4 | 80.4 | 82.1 |
| SEN | 83.8 | 83.8 | 83.8 |
| 78.4 | 78.4 | 75.7 |
| SPE | 57.9 | 68.4 | 78.9 |
| 84.2 | 84.2 | 94.7 |
| Group 3 | |||||||
| ACC | 78.6 | 76.8 | 80.4 |
| 85.7 | 83.9 | 80.4 |
| SEN | 86.5 | 83.8 | 83.8 |
| 83.8 | 81.1 | 73.0 |
| SPE | 63.2 | 63.2 | 73.7 |
| 89.5 | 89.5 | 94.7 |
group 1: radiomic signature; group 2: radiomic signature combining T stage and Dilated MPD/BD; group 3: radiomic signature combining T stage, Dilated MPD/BD, clinical TNM stage, and tumor margin. The clinical TNM and T stages of the tumor were determined preoperatively according to the American Joint Committee on Cancer TNM Staging System Manual, 7th edition. Dilated MPD/BD, dilated main pancreatic duct (MPD) or bile duct (BD). The bold values in this table showed the best performance in each group.
Figure 3Nomogram and its calibration curve based on group 2 for predicting grade 2/3. (A) Nomogram for group 2. (B) Calibration curve, where the diagonal dotted line is a perfect estimation by an ideal model. The predicted (estimated) probabilities of the validation set were sorted and divided into four groups based on quartiles to calculate the observed true probabilities. We calculated the goodness of fit to evaluate how well the solid line fits the dotted line. The goodness of fit is 0.8683, which indicates that the two lines fit well.