A convenient and mild protocol for the gold-catalyzed intermolecular coupling of substituted indoles with carbonyl-functionalized alkynes to give vinyl indoles is reported. This reaction affords 3-substituted indoles in high yield, and in contrast to the analogous reactions with simple alkynes which give bisindolemethanes, only a single indole is added to the alkyne. The protocol is robust and tolerates substitution at a range of positions of the indole and the use of ester-, amide-, and ketone-substituted alkynes. The use of 3-substituted indoles as substrates results in the introduction of the vinyl substituent at the 2-position of the ring. A combined experimental and computational mechanistic study has revealed that the gold catalyst has a greater affinity to the indole than the alkyne, despite the carbon-carbon bond formation step proceeding through an η2(π)-alkyne complex, which helps to explain the stark differences between the intra- and intermolecular variants of the reaction. This study also demonstrated that the addition of a second indole to the carbonyl-containing vinyl indole products is both kinetically and thermodynamically less favored than in the case of more simple alkynes, providing an explanation for the observed selectivity. Finally, a highly unusual gold-promoted alkyne dimerization reaction to form a substituted gold pyrylium salt has been identified and studied in detail.
A convenient and mild protocol for the gold-catalyzed intermolecular coupling of substituted indoles with carbonyl-functionalized alkynes to give vinyl indoles is reported. This reaction affords 3-substituted indoles in high yield, and in contrast to the analogous reactions with simple alkynes which give bisindolemethanes, only a single indole is added to the alkyne. The protocol is robust and tolerates substitution at a range of positions of the indole and the use of ester-, amide-, and ketone-substituted alkynes. The use of 3-substituted indoles as substrates results in the introduction of the vinyl substituent at the 2-position of the ring. A combined experimental and computational mechanistic study has revealed that the gold catalyst has a greater affinity to the indole than the alkyne, despite the carbon-carbon bond formation step proceeding through an η2(π)-alkyne complex, which helps to explain the stark differences between the intra- and intermolecular variants of the reaction. This study also demonstrated that the addition of a second indole to the carbonyl-containing vinyl indole products is both kinetically and thermodynamically less favored than in the case of more simple alkynes, providing an explanation for the observed selectivity. Finally, a highly unusual gold-promoted alkyne dimerization reaction to form a substituted gold pyrylium salt has been identified and studied in detail.
Gold-catalyzed
carbon–carbon and carbon–heteroatom
bond formation reactions are powerful and synthetically versatile
transformations. Coordination of an unsaturated substrate, such as
an alkene or alkyne to an electrophilic Au(I) or Au(III) center, results
in activation toward nucleophilic attack, and this has been exploited
in a wide range of intra- and intermolecular coupling reactions.[1,2]We have recently demonstrated how gold(I) catalysts promote
intramolecular
C–C bond formation in ynone-tethered indoles 1 to afford carbazoles 3 (Scheme A).[3] Alternative
catalysts such as AgOTf result in the formation of spirocycles 4.[4−7] DFT calculations suggest that carbon–carbon bond formation
proceeds by nucleophilic attack onto a gold- or silver-bound alkyne
(1 → 2).[8,9] The
calculations indicate that the spirocycle 4 is a kinetic
product, formed though indole C-attack onto the activated alkyne, and carbazole 3 is the thermodynamic product, formed through the corresponding C-addition when the spirocyclization
step is reversible. In all cases the calculated transition states
for carbon–carbon bond formation are located at low energy
(<41 kJ mol–1 with respect to the reference state)
and the C–C bond formation (1 → 2) step was calculated to be almost barrierless. These results, and
others,[10−17] demonstrate the synthetic versatility of 1 as a framework
to access a range of important structural motifs.
Scheme 1
Intra- and Intermolecular
Reactions of Indoles with Alkynes Catalyzed
by Au(I) and Ag(I)
The ease with which
ynone-tethered indoles 1 can be
converted into scaffolds 3 and 4 provided
encouragement that hitherto unknown intermolecular variants could
be developed to enable the facile C–H alkenylation of simple,
unfunctionalized indoles.[18−21] 3-Vinyl indoles (e.g., 7, Scheme B) are highly important molecules,
both as synthetic building blocks for biologically significant indole-based
drugs and natural products, and in their own right, with various biologically
active 3-vinyl indoles and methods to synthesize them known.[22−27] However, making 3-vinyl indoles via the gold-catalyzed coupling
of indoles and alkynes is challenging; while the required coupling
reaction (6 → 7, Scheme B) can be promoted using gold
catalysis, the vinyl indole products 7 undergo rapid
reaction with a second molecule of indole to form bisindolemethanes 8.[28−30] It is possible to inhibit the
second indole addition by designing systems in which the monofunctionalized
intermediate is trapped in situ (e.g., in a cyclization with a tethered
nucleophile),[28,31] but this approach does not allow
access to vinyl indoles like 7. Recently, Lee and co-workers
have shown that vinyl indoles can be prepared in excellent yield from
the reaction of 2-substituted indoles with an excess of alkyne at
low gold catalyst loadings, although with indole itself, bisindolemethanes were still generated.[32] While this could be circumvented through the use of a 2-boryl-substituted
indole and subsequent deprotection, the selective monoalkenylation
of unsubstituted indole remains an unsolved challenge.The formation
of the bisindolemethanes follows
an interesting mechanistic pathway. Both experimental[33] and computational[34] data with
indole and pyrrole nucleophiles indicate that the initial coupling
with the alkyne is gold-catalyzed, whereas the subsequent addition
of the second heterocycle to vinyl 7 is Brønsted
acid-catalyzed. Protonation occurs at the alkene group of the vinyl
indole to give a carbocation which is then attacked by another molecule
of indole; even in cases where no Brønsted acidic reagents are
used, trace acid formed in situ is usually sufficient to promote this
transformation.[5,35] Avoiding bisindolemethane formation is therefore a significant challenge, but
one we were confident could be overcome by harnessing the unique reactivity
of ynones.[3,5,8,9,11,13] In our previous work, we have shown that the electron-withdrawing
carbonyl group of the ynone moiety can significantly enhance the reactivity
of the alkyne when treated with a Au(I) catalyst. This enables ynones
to be coupled with indoles under very mild conditions. Furthermore,
the same carbonyl group has been shown to suppress Brønsted acid-catalyzed
migration reactions in the resulting products—both features
were postulated to promote the selective formation of the desired
vinylindoles 11 in this study (Scheme C).The successful realization of this
strategy is reported herein.
A simple method for the synthesis of a range of vinyl indoles 11 has been established, using a cationic gold(I) catalyst
to promote the coupling of indoles and ynones, as well as other electron
deficient ester- and amide-based alkyne derivatives (Scheme C). Our theory that the carbonyl
group can enhance the first vinylation reaction but suppress subsequent
reactions appears to be valid, given that reactions proceed under
mild conditions and bisindolemethane formation is
completely avoided. A series of mechanistic and computational experiments
have also been performed that enable a deeper understanding of the
nature of the states involved in C–C bond formation, and help
to explain how the site of Au-coordination both influences the regioselectivity
of the vinylindole formation and accounts for the stark difference
in reactivity between the intermolecular and intramolecular variants.
An investigation into the speciation of the gold catalyst is also
presented, which enabled the identification of a novel gold pyrylium
complex 12, arising from the dimerization of two ynones.
Results
and Discussion
Catalyst Optimization and Synthetic Scope
Our initial
experiments focused on assessing the intermolecular addition of indole 5 to ynone 13, as a like-for-like comparison
with the intramolecular cyclization of 1: the results
are summarized in Table . First, AgOTf, Cu(OTf)2 and SnCl2.2H2O were tested, as these reagents were found to be excellent catalysts
for the intramolecular spirocyclization of indoles 1 into 4 in our previous work (Scheme A). However, all were ineffective in this reaction;
no consumption of either 5 or 13 was observed
when analyzed using 1H NMR spectroscopy. A more reactive
catalyst was therefore sought, and the Gagosz catalyst [Au(NTf2)(PPh3)]2·Tol (Au-1) was chosen for its well-known activity and ready availability.[36] Pleasingly, Au-1 effectively catalyzed
the coupling, promoting 90% conversion into vinyl indole 14a at room temperature (entry 4) at 5 mol % catalyst loading, with
further optimization enabling complete conversion into 14a at 40 °C over 2 h (entry 5; for additional optimization experiments
see the Supporting Information). The vinyl
indole product 14 was formed as a mixture of E- and Z- isomers, which are believed to
equilibrate in solution. The formal electrophilic addition occurred
at the C-position of
the indole as expected, and pleasingly, no evidence for the formation bisindolemethane product 16a was obtained.
This contrasts starkly to the reaction outcome when indole 5 was reacted with phenyl acetylene 15 under the same
conditions; in this case the only product observed was bisindolemethane 16b.
Table 1
Intermolecular Reaction
of Indole 5 with Ynone 13 and Alkyne 15
entry
alkynea
catalyst
temp (°C)
time (h)
productb (E/Z)
1
13
AgOTf (10 mol %)
RT
24
–
2
13
Cu(OTf)2 (10 mol %)
RT
24
–
3
13
SnCl2·2H2O (10 mol %)
RT
24
–
4
13
Au-1 (5 mol %)
RT
24
14a, 90% (73:27)
5
13c
Au-1 (5 mol %)
40
2
14a, 100% (71:29)
6
15d
Au-1 (5 mol %)
40
2
16b, 81%
7
15d
Au-1 (5 mol %) C2CO3 (10 mol %)
40
16
16b trace
8
15d
Au-1 (5 mol %) NEt3 (10 mol %)
40
16
–
1.0 equiv
unless stated.
Conversion
determined by the ratio
of remaining indole to both geometrical isomers of 14 by 1H NMR spectroscopy.
1.5 equiv of 13 was
used.
1.5 equiv of 15 was
used.
1.0 equiv
unless stated.Conversion
determined by the ratio
of remaining indole to both geometrical isomers of 14 by 1H NMR spectroscopy.1.5 equiv of 13 was
used.1.5 equiv of 15 was
used.Attempts to suppress
the formation of 16b by adding
basic additives to quench trace Brønsted acid formation were
unsuccessful with the basic additives inhibiting the reaction (entries
7–8).With conditions for intermolecular indole-ynone
coupling established,
attention next moved to exploring the scope of the reaction. Variation
of the indole coupling partner was first examined, with a range of
indoles bearing electronically diverse substituents around the benzenoid
portion tested, and all performed well under the standard conditions
(14–25Scheme A). Pleasingly, functionalization on the
pyrrole ring of the indole is also tolerated, with indoles bearing C- and N-substituents formed in good
yields (26a, 26b, 27, Scheme A). The ynone coupling
partner can also be varied, which is noteworthy given that the electronic
properties of the ynone can have a major influence on reaction efficiencies
in related processes (28–30, Scheme B).
Scheme 2
Selective
Gold-Catalyzed Monovinylation of Indoles with Electron
Deficient Alkynes
2 h reaction time.
3 h reaction time.
18
h reaction time.
19 h
reaction time.
21 h reaction
time at room temperature.
24 h reaction time.
27 h reaction time.
48 h reaction time.
Selective
Gold-Catalyzed Monovinylation of Indoles with Electron
Deficient Alkynes
2 h reaction time.3 h reaction time.18
h reaction time.19 h
reaction time.21 h reaction
time at room temperature.24 h reaction time.27 h reaction time.48 h reaction time.We were also keen to
examine the reactivity of an indole substrate
in which the more reactive C-position is blocked, and therefore ynone 13 was
reacted with skatole 31 (Scheme C). Either C2-vinylation or dearomative C3-difunctionalisation
were considered to be the two most likely outcomes in this case, but
neither of these products were isolated; instead, the dominant component
of the reaction mixture was the three-component reaction product 32. This product presumably formed via an initial C-vinylation, followed by a
cascade process, analogous to that previously observed by Tian and
co-workers for a related system treated under Brønsted acid-catalyzed
conditions.[37] The formation of 32 was encouraging nonetheless, as it demonstrated that C-addition to skatole was occurring,
but a subsequent condensation reaction did not allow isolation of
the desired vinylindole product. Pleasingly, the introduction of an N-substituent prevented the three-component coupling, with
indoles 33–35 all being converted
into vinylindoles 36–38 in good yields,
with selective vinylation at the indole C-position. Finally, we tested whether other electron
deficient alkynes may react similarly to ynones, and pleasingly, ester-
(40–42, Scheme D) and amide-based (44–46, Scheme E) products were formed in good to excellent yields in the same way.
These reactions are practically very simple to perform, and across
all reaction series, the only change needed to the standard method
was to vary the reaction time (based on TLC analysis). Most products
were isolated as mixtures of geometrical isomers, with the observed E/Z ratios believed to be thermodynamic
outcomes, resulting from facile alkene isomerism enabled by conjugation
of the electron-rich indole into the carbonyl. For products formed
via vinylation at the indole C-position, the E isomer tends to predominate,
based on chemical shift trends, nOe studies, and comparisons to literature
NMR data (see Supporting Information).[38] In C2-vinylation
examples (36–38, 42, 46) the Z isomer is formed as the major geometrical
isomer, with the assignment of product 37 based on X-ray
crystallographic data[39] and the others
by analogy.
Experimental and Computational Mechanistic
Studies
The results from the synthetic studies raised a number
of mechanistic
questions about the pathways underpinning the formation of the substituted
indole compounds. These were as follows:What is the origin of the selectively for a 1:1 coupling
in these reactions, compared to the more conventional addition of
two molecules of indole to the alkyne to give a bisindolemethane?What factors influence
the stark difference in the relative
ease of the intra- and intermolecular variants of the coupling between
an indole and ynone?What controls the C versus C regioselectivity
addition to the indole, especially when the C3 position is substituted?A combined
experimental and computational mechanistic
study was undertaken to address these questions. In the first instance,
the interactions between the gold catalyst [Au(NTf2)(PPh3)]2·Tol and the individual alkyne and heterocyclic
substrates were investigated; the idea here was that a better understanding
of gold speciation with respect to both reaction components would
shed light on the observed reactivity, both in the intra- and intermolecular
variants. 31P{1H} NMR spectroscopy was therefore
used to study the speciation, and these experimental data were compared
to calculations using density functional theory (DFT). Full details
of the computational methods are provided in the Supporting Information, and all energies quoted are Gibbs
energies in kJ mol–1 at 298.15 K. In the calculations
the gold catalyst was treated as [Au(PPh3)]+. Experimentally, there is evidence of solvent-dependent ion-pairing
in these systems,[40−42] and we have investigated the potential effects computationally
(see Supporting Information).The
interaction between a range of substituted alkynes and [Au(PPh3)]+ was studied first. As shown in Figure a, the gold has the potential
to exhibit either η1(O)-binding, A,
or η2(π) binding, B, to the alkynes.
It was reasoned that the energy balance between these different binding
modes would be influenced by changes to the substituents on the phenyl-ring
of the alkyne, and whether a ketone, amide, or ester substituent was
present.
Figure 1
(a) Isodesmic reaction used to compare η1(O) and
η2(π)-bound forms of substituted alkynes. Energies
are Gibbs energies at 298.15 K at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P)
level with COSMO solvation in CH2Cl2. (b) 31P{1H} NMR spectra in CD2Cl2 solution showing the interaction between [Au(NTf2)(PPh3)]2·Tol and different substrates performed
at a 1:2 gold:substrate (c) proposed η1(O) and η2(π) binding for DMF and PhC2C6H4-4-NMe2.
(a) Isodesmic reaction used to compare η1(O) and
η2(π)-bound forms of substituted alkynes. Energies
are Gibbs energies at 298.15 K at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P)
level with COSMO solvation in CH2Cl2. (b) 31P{1H} NMR spectra in CD2Cl2 solution showing the interaction between [Au(NTf2)(PPh3)]2·Tol and different substrates performed
at a 1:2 gold:substrate (c) proposed η1(O) and η2(π) binding for DMF and PhC2C6H4-4-NMe2.The energy balance between states A and B was evaluated by DFT for a range of substituted alkynes (Figure a). Two important
trends were evident in the data. First, using an amide-substituted
alkyne (see 48 and 49) is predicted to increase
the relative stability of the O-bound form, A. Second, the introduction of an electron-donating NMe2-group into the 4-position of the alkyne should have the opposite
effect and increase the affinity of the η2(π)-bound
form, C (see 47, 49, and 51).These predictions were supported by experimental
data which used 31P{1H} NMR spectroscopy to
probe the speciation
of the gold complex in solution. Experiments performed with DMF and
PhC2C6H4-4-NMe2 provided
reference spectra for η1(O) (A) and η2(π) binding (B), respectively (Figure b, spectra (2) and (3), Figure c). Spectrum (4),
obtained after treatment of a CH2Cl2 solution
of [Au(NTf2)(PPh3)]2·Tol with 51, exhibited a sharp resonance at δ 35.8, consistent
with the η2(π)-alkyne coordination mode, B, being the dominant form. A resonance at δp 41.0 was assigned to the formation of a product arising from alkyne
dimerization which will be discussed in detail later. An analogous
reaction with 50, which lacks the NMe2-group
on the aryl ring, did not show any change when compared with [Au(NTf2)(PPh3)]2·Tol, spectrum (5). However,
spectrum (7), obtained from a reaction with amide 48,
was dominated by a sharp single resonance at δp 29.7,
consistent with binding mode A. Using amide 49, which also possessed a NMe2 substituent on the aryl
group, showed evidence for both η1(O) and η2(π) binding, spectrum (6). Several spectra exhibited
a resonance at δp 45.5, which is likely due to [Au(PPh3)2]+ on the basis of a comparison with
an authentic sample.Next, the relative affinity of the gold
cation toward the triple
bonds of a range of alkynes was evaluated through a series of calculated
isodesmic reactions (Figure ). The change in free energy for alkyne substitution of the
parent complex B by alkynes
with various substituents in the 4-position of the phenyl ring was
calculated using DFT. These data demonstrate the presence of a linear
free energy relationship between the relative energy change on binding
to the gold and the Hammett (σp) parameter of the
aryl substituent. The positive slope indicates that electron-donating
groups favor η2(π)-alkyne coordination to the
gold cation. This is consistent with alkyne binding being a net donor
to the gold with π-backdonation to the vacant π*-orbitals
on the ligand (a key factor affecting the stability of midtransition
metal alkyne complexes) not being a dominant effect.[43,44]
Figure 2
Isodesmic
reaction used to calculate affinity of alkynes for gold.
Energies are Gibbs energies at 298.15 K at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P)
level with COSMO solvation in CH2Cl2 (top).
Linear free energy relationship between the calculated change in free
energy against Hammett parameter σp (bottom). Dashed
line shows fit to a least mean squares linear regression (R2 = 0.92).
Isodesmic
reaction used to calculate affinity of alkynes for gold.
Energies are Gibbs energies at 298.15 K at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P)
level with COSMO solvation in CH2Cl2 (top).
Linear free energy relationship between the calculated change in free
energy against Hammett parameter σp (bottom). Dashed
line shows fit to a least mean squares linear regression (R2 = 0.92).The predicted enhanced affinity for the gold cation by electron-rich
alkynes was supported by 31P{1H} NMR spectroscopy.
Reaction of [Au(NTf2)(PPh3)]2·Tol
with 10 equiv of bromine-substituted alkyne 53 resulted
in little change to the 31P{1H} NMR spectrum
(Figure , spectrum
(4)) with only a small amount of starting material consumed.[45] The corresponding reaction with 13 resulted in a complex series of resonances in the region between
δ 40 and 45: the resonance for [Au(NTf2)(PPh3)]2·Tol was still present (spectrum (5)).
In contrast, in spectrum (3) when the 4-OMe-substitued alkyne, 52, was used almost all of the starting material was consumed
and again a series of new resonances between δ 40 and 45 were
observed. A resonance at δ 37.0 was also present which, by analogy
of the results in Figure , may represent a complex with an η2(π)-bound
alkyne. Reaction between [Au(NTf2)(PPh3)]2·Tol and 10 equiv of NMe2-substituted 47 resulted in a single new resonance at δp 41.9. The chemical shift of this resonance is markedly different
from those assigned to the η1(Ο) and η2(π)alkyne (Figure ), which typically appear at δp 29
and 35, respectively. The species responsible for the resonance at
δp 41.9 was identified as a gold-substituted pyrylium
salt and is discussed later.
Figure 3
31P{1H} NMR spectra of
a mixture of [Au(NTf2)(PPh3)]2·Tol
and ynones in a 1:10
gold:substrate ratio in CD2Cl2 solution.
31P{1H} NMR spectra of
a mixture of [Au(NTf2)(PPh3)]2·Tol
and ynones in a 1:10
gold:substrate ratio in CD2Cl2 solution.These results demonstrate that the gold cation
may readily coordinate
to the alkyne and that electronic effects have a significant influence
on the binding mode (i.e., η1(Ο) versus η2(π)alkyne), with electron-donating substituents on the
aryl substituent favoring the required η2(π)alkyne
binding.Next, potential gold coordination to the indole component
was examined.
Although the carbon–carbon bond formation step in the vinylation
reaction was expected to occur through nucleophilic attack of the
indole onto a gold-coordinated alkyne, we reasoned that the indoles
could also be suitable ligands for the Au(I) cations themselves, and
thus compete for the catalyst with the ynone. Experimental evidence
for this interaction between the gold and heterocycle was obtained
through a series of titrations between [Au(NTf2)(PPh3)]2·Tol and indole, 5, or skatole, 31, in CD2Cl2 solution, monitored by 31P{1H} NMR spectroscopy. In both cases, the appearance
of the spectra was concentration-dependent (Figure ). For indole, a broad resonance was observed
at all [Au(NTf2)(PPh3)]2·Tol:5 ratios, with a shift to lower field of ca. 4.3 ppm when
moving from a 1:1 to a 1:10 ratio. For skatole, a single sharp resonance
was observed, which exhibited a smaller concentration-dependent change
in chemical shift.
Figure 4
31P{1H} NMR spectra of [Au(NTf2)(PPh3)]2·Tol with different ratios
of 5 (top) and 31 (bottom) in CD2Cl2.
31P{1H} NMR spectra of [Au(NTf2)(PPh3)]2·Tol with different ratios
of 5 (top) and 31 (bottom) in CD2Cl2.These 31P{1H} NMR studies support the suggestion
that the heterocycles may indeed bind to the gold cation. DFT calculations
allowed for the relative binding affinity of [Au(PPh3)]+ toward indole 5 and skatole 31 when
compared to the alkyne 13 to be evaluated (Scheme ). Binding of the [Au(PPh3)]+ to the five-membered ring of 5 and 31 was successfully modeled as states C and C respectively. These were taken as the reference states for the calculations
with the addition of one molecule of ynone 13. Coordination
of the [Au(PPh3)]+ to the carbonyl group of
the ynone is endergonic (+12 and +8 kJ mol–1 for
indole and skatole, respectively), whereas η2(π)-coordination
of the alkyne lies at +18 and +14 kJ mol–1 for indole
and skatole, respectively. This is a remarkable prediction as the
prevailing mechanistic view of gold-catalyzed reactions of this type
is that the metal activates the alkyne toward nucleophilic addition
via η2(π)-coordination of the alkyne.
Scheme 3
Relative
Changes in Free Energy on Coordination of Indole, 5,
Skatole, 31, and 13 to [Au(PPh3)]+
Energies are Gibbs energies
at 298.15 K at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P) level with COSMO
solvation in toluene.
Relative
Changes in Free Energy on Coordination of Indole, 5,
Skatole, 31, and 13 to [Au(PPh3)]+
Energies are Gibbs energies
at 298.15 K at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P) level with COSMO
solvation in toluene.The pathways controlling
the formation of the vinyl indoles were
investigated next. In the first instance, the thermodynamic preference
for C- and C-addition of the alkyne to indole and
skatole were calculated. (Scheme ). For indole, the experimentally observed C-addition to produce 14 is exergonic by −111 kJ mol–1:
the thermodynamic driving force for C-addition to produce 55 is essentially
identical (−110 kJ mol–1). The C-regioselectivy of the reaction between 5 and 13 is therefore predicted to be kinetic
in nature. In the skatole case, C-addition will produce 57, which is the intermolecular
analogue of the spirocycle 4 (Scheme ). As a consequence of the methyl group at
the site of substitution, 57 is not able to rearomatize,
which is reflected in the fact it lies at only −6 kJ mol–1 with respect to 31 and 13. The C-addition product, 56, which has rearomatized following a formal proton migration,
is exergonic by −117 kJ mol–1, broadly in
line with the addition to indole 5.
Scheme 4
DFT-Calculated Changes
in Energy for Products Arising from C- and C-Addition to Indole and Skatole
Energies are Gibbs
energies
at 298.15 K at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P) level with COSMO
solvation in toluene.
DFT-Calculated Changes
in Energy for Products Arising from C- and C-Addition to Indole and Skatole
Energies are Gibbs
energies
at 298.15 K at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P) level with COSMO
solvation in toluene.With these data strongly
indicating that the C-selectivity for the reaction is kinetic
in nature, transition states for C–C bond formation were sought
to support this using DFT. States for the addition of the indole to
a gold-coordinated alkyne, B, could be readily located;
however, the corresponding pathways associated with the addition of
the ynone to a coordinated indole (C) could not be found. A pathway for the addition of indole
to the O-coordinated alkyne, A, was
located, but at much higher energy than the pathway via B (see Supporting Information). These data
support the supposition that the reaction proceeds via addition of
indole to an η2(π) gold-coordinated ynone,
despite the heterocycle being a better ligand for the metal.Transition states for C- and C-addition
of 5 to B were located (TS and TS) at +59 and +67 kJ mol–1, respectively (Figure ). Although the difference
in energy is small, C-addition through TS was found to be the lower energy pathway at all levels of theory
employed (see Supporting Information).
A Dynamic Reaction Coordinate (DRC) analysis indicated that TS connected state B with Wheland-type intermediate D. Attempts to optimize the geometry
of D resulted in E in which a hydrogen atom had migrated to
the oxygen of the ynone, resulting in rearomatization of the indole.
This may indicate that D sits
in a shallow minimum and, similarly, attempts to optimize F (which DRC predicts connects to B via TS) resulted
in G.
Figure 5
DFT-calculated pathways
for the addition of 5 or 31 to gold-coordinated
alkyne complex B. Energies
are Gibbs energies in kJ mol–1 at 298.15 K at the
D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P) level with
COSMO solvation in toluene.
DFT-calculated pathways
for the addition of 5 or 31 to gold-coordinated
alkyne complex B. Energies
are Gibbs energies in kJ mol–1 at 298.15 K at the
D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P) level with
COSMO solvation in toluene.For skatole 31 the kinetic preference for the site
of attack was reversed. Here, C-addition via TS lies at +60 kJ mol–1, whereas TS was located at +81 kJ mol–1. Again, attempts to optimize F resulted in G. However, in the case of C-addition via TS it was possible to optimize the corresponding states D (+10 kJ mol–1), presumably as hydrogen migration is not possible in this Wheland
intermediate. Instead, a transition state for vinyl migration was
located (TS) at +54
kJ mol–1. This leads to G, again presumably via F. A transition state for methyl migration was also obtained,
but this was at higher energy (see Supporting Information). These data therefore indicate that bothC- and C- addition pathways for addition to
skatole will lead to 32, although the former route is
kinetically preferred.The data also provide an explanation
for the difference in reactivity
between the intra- and intermolecular systems. There is clearly a
greater entropic penalty in the case of the intermolecular coupling
reaction; however, the stronger binding of the gold cation to the
indole when compared to the alkyne will also inhibit access to the
product-forming pathways. Binding to the indole is still possible
in the case of the intramolecular pathway; however, the preorganized
structure of the substrate may enable low energy π-slippage
events[46−48] leading to alkyne coordination without the necessity
for loss of the metal. In the intermolecular case, this is not possible
and decoordination of the gold followed by re-coordination in the
thermodynamically less preferred binding mode is required.With
the origin of the site-selectivity of the reaction established,
the factors controlling single versus double addition of the indole
to alkynes were then investigated. In the case of the system derived
from the ynone substrate, the relative thermodynamic free energy change
for the formation of 16a from 14a and 5 (Scheme a) was calculated to be −3 kJ mol–1. In
the case of the corresponding system based on phenylacetylene, the
formation of 16b from 15b and 5 was found to have much greater change in free energy (ΔG298 = −25 kJ mol–1, Scheme b). These data indicate
that in the case of the ynone system there is, at best, only a very
small thermodynamic driving force for the addition of a second indole
to 14a.
Scheme 5
DFT-Calculated Pathways for the Acid Catalyst
Addition to Vinylindole 14 (a) and the Corresponding
Species Derived from Phenylacetylene
(b)
Energies are Gibbs energies
at 298.15 K (in kJ mol−1 for (c) and (d))
at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P) level with COSMO solvation
in CH2Cl2.
DFT-Calculated Pathways for the Acid Catalyst
Addition to Vinylindole 14 (a) and the Corresponding
Species Derived from Phenylacetylene
(b)
Energies are Gibbs energies
at 298.15 K (in kJ mol−1 for (c) and (d))
at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P) level with COSMO solvation
in CH2Cl2.The kinetic
factors controlling this difference in reactivity between
the two systems were also investigated. As previous experimental and
computational work had established that the addition of a second indole
molecule to vinyl indoles was acid-catalyzed,[33,34] analogous processes were calculated for the addition of a second
molecule of indole to vinyl indole 14 (Scheme c). Protonation of 14 could be envisaged to occur at either the carbonyl groups to give H or the alkene to give I. Cation H, which was taken as the reference state for this series of calculations,
was found to be 20 kJ mol–1 more stable than I. Transition states for the addition of indole to both H and I (TS and TS) were located at +114
and +87 kJ mol–1 respectively. The transition state
for the analogous phenylacetylene-derived product (TSScheme d) lies at +67 kJ mol–1 with respect
to the cation precursor and the coupled product M lies
at lower energy than those derived from 14 (+101 and
+68 kJ mol–1 for J and K, respectively)The precise putative pathway for the addition
of the second indole
in the ynone system will depend on the relative rate of proton transfer
between H and I (if this is rapid and an
equilibrium concentration of I is present, then the energic
span will be 87 kJ mol–1, otherwise it will be 114
kJ mol–1). However, it is evident the addition of
a second indole to either cation of the ynone-derived system has a
higher barrier than for the phenyl-acetylene derivative. In the ynone
case, the resulting cationic intermediates J and K lie at a significantly higher relative energy than in the
phenylacetylene case, M.At the start of this study,
we postulated that the introduction
of the carbonyl group on the alkynes might reduce the proclivity of
the vinylindole product to undergo additional reactions with indole,
and this notion was borne out in the synthetic reactions featured
in Scheme . Further,
it is supported by the DFT data, with the carbonyl-based system facing
significantly higher kinetic barriers for the addition of a second
indole compared to the analogous simple alkyne system, and there is
a negligible thermodynamic driving force for this process.
Identification
of a Novel Gold-Coordinated Pyrylium Salt from
Alkyne Coupling
The NMR studies designed to investigate the
interaction of substituted ynones with [Au(NTf2)(PPh3)]2·Tol had demonstrated that a selective
reaction occurred when 47 was employed. Specifically,
the addition of 2 equiv of 47 to a CD2Cl2 solution of AuI complex [Au(NTf2)(PPh3)]2·Tol resulted in an immediate change in
color to deep red and the formation of 12, as shown by
the resonance in the 31P{1H} NMR spectrum at
δp 41.9. Although all attempts to isolate 12 from the reaction mixture were unsuccessful, a combination of spectroscopic
methods demonstrated that the product was a gold-substituted pyrylium
salt,[49] arising from the dimerization of
two ynones (Scheme ).
Scheme 6
Formation of Pyrylium Salt 12
Ar = C6H4-4-NMe2.
Formation of Pyrylium Salt 12
Ar = C6H4-4-NMe2.The ESI mass spectrum of the solution exhibited a peak
at m/z = 833.2579 consistent with 12 having the composition [Au(47)2(PPh3)]+; that is, 2 equiv of the alkyne had
been incorporated
into the coordination sphere of the metal. The 13C{1H} NMR spectrum (Figure ) exhibited a series of resonances consistent with
the formulation of 12 as a pyrylium complex. For example,
a doublet resonance at δ 161.4 (2JPC = 111.2 Hz) is consistent with a gold-bound carbon
atom and compares favorably with the corresponding resonance in [Au(C6H2-2,4,6-Me3)(PPh3)] (δ
169.8, 2JPC = 111.2 Hz).[50] A doublet resonance at δ 175.5 (3JPC = 5.4 Hz) and singlets at δ
171.8 and 165.2 were observed whose chemical shifts are characteristic
of carbon atoms in the 2, 4, and 6 positions of a pyrylium salt. Two
resonances for the NMe2 groups were observed, indicating
that two ynones had been incorporated into 12 but in
different environments. Moreover, only a single resonance was observed
in the carbonyl region at δ 202.0, indicating that one acyl
group had been modified significantly during the reaction, which is
again consistent with pyrylium formation.
Figure 6
Expansion of a 13C{1H} NMR spectrum of 12 in CD2Cl2 solution. Ar = C6H4-4-NMe2.
Expansion of a 13C{1H} NMR spectrum of 12 in CD2Cl2 solution. Ar = C6H4-4-NMe2.The gold-mediated intramolecular
coupling of alkynes is a common
reaction pathway. However, corresponding intermolecular routes are
scarce.[51−53] Establishing the mechanistic pathways that lead to 12 is therefore important in understanding this unusual product
formation. The initial dimerization step was anticipated to occur
through nucleophilic attack at an η2(π)-coordinated
complex of ynone 47, by either the carbonyl (O-attack) or C≡C group (C-attack)
of another molecule of ynone 47.DFT calculations
were used to distinguish between these possibilities
and the results are shown in Figure . The alkyne complex B and a molecule of ynone 47 was taken as the reference
state for the calculations, collectively referred to as N. Considering first C-attack, transition state TS (located at +71 kJ mol–1) involves addition of the carbonyl-substituted carbon of 47 onto the aryl-substituted carbon () of the gold-coordinated alkyne. Attempts to optimize structure O (the expected state arising from TS) were unsuccessful: in all cases, pyrylium complex 12 was obtained. This may indicate that O either
sits in a very shallow minimum or that TS is a bifurcated transition state proceeding directly to 12. The transition state for C-attack at proceeds through TS, which is at much higher energy (+111 kJ mol–1) than TS so
is uncompetitive.
Figure 7
DFT-calculated pathways for the gold-mediated dimerization
of alkynes.
All energies are Gibbs energies at 298.15 K in kJ mol−1 at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P) level with COSMO solvation
in CH2Cl2.
DFT-calculated pathways for the gold-mediated dimerization
of alkynes.
All energies are Gibbs energies at 298.15 K in kJ mol−1 at the D3(BJ)-PBE0/def2-TZVPP//BP86/SV(P) level with COSMO solvation
in CH2Cl2.The alternative O-attack by 47 onto of B proceeds to give alkenyl complex Q through TS (+69 kJ mol–1), which
lies at a similar energy to TS (+71 kJ mol–1). As with the C-attack pathway, addition to lies
at considerably higher energy in the O-attack case
(TS + 93 kJ mol–1) and therefore can be discounted. On the basis of the energies of TS and TS it is likely that both O- and C-attack pathways operate, but it appears that pyrylium
complex formation can only take place via C-attack,
as all attempts to find a pathway by which Q might itself
rearrange into 12 were unsuccessful. In this case, it
is likely that Q is an off-cycle complex in equilibrium
with the starting materials N, and because Q lies at higher energy than the reference state (and 12 much lower), the irreversible formation of 12 through TS predominates.We were
also interested to learn why in the synthetic NMR experiments
described earlier (Figure ), selective pyrylium formation was only observed when using
electron rich ynone 47. Therefore, the calculations were
repeated for the two lowest energy O- and C- attack pathways to evaluate the effects of different
substituents on the ynone and the ligand on gold (Figure ). Overall, the ligand effects
are small, but the most notable observation is that in the case of
the C6H5-substituted ynone 13,
the corresponding transition state leading to the pyrylium complex TS, lies at 12 kJ mol–1 higher in energy than the O-attack pathway. This
need not rule out selective pyrylium formation if the reaction remains
under thermodynamic control, but side reactions resulting from Q are also possible. For example, Q could potentially
be converted into to a cyclic complex, via a mechanism related to
that observed in the gold-catalyzed 1,3-O-transposition
of ynones (see Supporting Information for
details).[54] Thus, the experimental observation
that the reaction of C6H5-substituted ynone 13 is much less selective than it is for the C6H4-4-NMe2-substituted case is likely a consequence
of an increased kinetic preference for Q resulting in
more side-reactions.
Conclusions
The use of carbonyl-substituted
alkynes as coupling partners in
the gold-catalyzed coupling with indoles has unlocked a well-controlled
pathway enabling selective monovinylation to give vinyl indoles. DFT
calculations reveal that there is both a kinetic and thermodynamic
component to the observed selectivity, with the carbonyl group destabilizing
the intermediate carbocations and related transition states for C–C
addition when compared to more conventional substrates. It is clear
that the outcome of the reaction is controlled by the nature of the
alkyne substrate, with control reactions with phenylacetylene giving
the expected bisindolemethane.To account for
the difference between the intra-[3,5,7,8] and intermolecular
variants of the coupling reaction, there is presumably an entropic
component, but also important is the somewhat surprising observation
that the gold catalyst shows a thermodynamic preference for binding
to the indole, rather than the alkyne. This may also explain the lack
of activity of other Lewis acid catalysts in the intermolecular reactions
as it is not unreasonable to expect that the most potent nucleophile
in the reaction is also the best ligand for the metal.The observation
of a product arising from the coupling of two alkynes
within the coordination sphere of gold is remarkable. Although related
pyrylium salts have been frequently proposed in the gold-catalyzed
intramolecular coupling of alkynes with tethered carbonyl groups,[55,56] and may be isolated,[57] the observation
of 12 is a unusual example of an intermolecular addition
and may offer the potential for future synthetic findings.
Authors: Christian Steuer; Christian Gege; Wolfgang Fischl; Karl H Heinonen; Ralf Bartenschlager; Christian D Klein Journal: Bioorg Med Chem Date: 2011-05-18 Impact factor: 3.641
Authors: John T R Liddon; Michael J James; Aimee K Clarke; Peter O'Brien; Richard J K Taylor; William P Unsworth Journal: Chemistry Date: 2016-05-19 Impact factor: 5.236