Literature DB >> 35426544

Adaptive Weighted Neighbors Method for Sensitivity Analysis.

Chenxi Dai1, Kaifa Wang2.   

Abstract

Identifying key factors from observational data is important for understanding complex phenomena in many disciplines, including biomedical sciences and biology. However, there are still some limitations in practical applications, such as severely nonlinear input-output relationships and highly skewed output distributions. To acquire more reliable sensitivity analysis (SA) results in these extreme cases, inspired by the weighted k-nearest neighbors algorithm, we propose a new method called adaptive weighted neighbors (AWN). AWN makes full use of the information contained in all training samples instead of limited samples and automatically gives more weight to nearby samples. Then, the bootstrap technique and Jansen's method are used to obtain reliable SA results based on AWN. We demonstrate the performance and accuracy of AWN by analyzing various biological and biomedical data sets, three simulated examples and two case studies, showing that it can effectively overcome the above limitations. We therefore expect it to be a complementary approach for SA.
© 2022. International Association of Scientists in the Interdisciplinary Areas.

Entities:  

Keywords:  Adaptive weighted neighbors; Bioscience; Nonlinearity; Sensitivity analysis; Skewed distribution

Mesh:

Year:  2022        PMID: 35426544     DOI: 10.1007/s12539-022-00512-4

Source DB:  PubMed          Journal:  Interdiscip Sci        ISSN: 1867-1462            Impact factor:   3.492


  5 in total

Review 1.  A methodology for performing global uncertainty and sensitivity analysis in systems biology.

Authors:  Simeone Marino; Ian B Hogue; Christian J Ray; Denise E Kirschner
Journal:  J Theor Biol       Date:  2008-04-20       Impact factor: 2.691

2.  Epidemics and underlying factors of multiple-peak pattern on hand, foot and mouth disease inWenzhou, China.

Authors:  Chen Xi Dai; Zhi Wang; Wei Ming Wang; Yong Qin Li; Kai Fa Wang
Journal:  Math Biosci Eng       Date:  2019-03-12       Impact factor: 2.080

3.  HiSCF: leveraging higher-order structures for clustering analysis in biological networks.

Authors:  Lun Hu; Jun Zhang; Xiangyu Pan; Hong Yan; Zhu-Hong You
Journal:  Bioinformatics       Date:  2021-05-01       Impact factor: 6.937

4.  An additive Gaussian process regression model for interpretable non-parametric analysis of longitudinal data.

Authors:  Lu Cheng; Siddharth Ramchandran; Tommi Vatanen; Niina Lietzén; Riitta Lahesmaa; Aki Vehtari; Harri Lähdesmäki
Journal:  Nat Commun       Date:  2019-04-17       Impact factor: 14.919

5.  Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans.

Authors:  Tommi Vatanen; Aleksandar D Kostic; Eva d'Hennezel; Heli Siljander; Eric A Franzosa; Moran Yassour; Raivo Kolde; Hera Vlamakis; Timothy D Arthur; Anu-Maaria Hämäläinen; Aleksandr Peet; Vallo Tillmann; Raivo Uibo; Sergei Mokurov; Natalya Dorshakova; Jorma Ilonen; Suvi M Virtanen; Susanne J Szabo; Jeffrey A Porter; Harri Lähdesmäki; Curtis Huttenhower; Dirk Gevers; Thomas W Cullen; Mikael Knip; Ramnik J Xavier
Journal:  Cell       Date:  2016-04-28       Impact factor: 41.582

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.