| Literature DB >> 35425820 |
Tianci Chai1,2,3, Mengyue Tian4, Xiaojie Yang2,5, Zhihuang Qiu1,2, Xinjian Lin4, Liangwan Chen1,2.
Abstract
Hypertension is a key risk factor for spontaneous coronary artery dissection (SCAD) and aortic dilation. Circulating proteins play key roles in a range of biological processes and represent a major source of druggable targets. The aim of this study was to identify circulating proteins that were associated with blood pressure (BP), SCAD and aortic dilation. We identified shared genetic variants of BP and SCAD in genome-wide association studies, searched for circulating protein affected by these variants and examined the association of circulating protein levels with BP, aortic aneurysm and dissection (AAD) and aortic diameters by integrating data from circulating protein quantitative trait loci (pQTL) studies and genome wide association study (GWAS) in individuals from the UK Biobank using two-sample Mendelian randomization analysis methods. Single nucleotide polymorphisms (SNPs) in JAG1, ERI1, ULK4, THSD4, CMIP, COL4A2, FBN1, FAM76B, FGGY, NUS1, and HNF4G, which were related to extracellular matrix components, were associated with both BP and SCAD. We found 49 significant pQTL signals among these SNPs. The regulated proteins were encoded by MMP10, IL6R, FIGF, MMP1, CTSB, IGHG1, DSG2, TTC17, RETN, POMC, SCARF2, RELT, and GALNT16, which were enriched in biological processes such as collagen metabolic process and multicellular organism metabolic process. Causal associations between BP and AAD and aortic diameters were detected. Significant associations between circulating levels of cathepsin B, a well-known prorenin processing enzyme, and BP and aortic diameters were identified by using several Mendelian randomization analysis methods and were validated by independent data.Entities:
Keywords: aortic dissection (AD); blood pressure; cathepsin; circulating proteins; genome-wide association study; spontaneous coronary artery dissection (SCAD)
Year: 2022 PMID: 35425820 PMCID: PMC9001941 DOI: 10.3389/fcvm.2022.762468
Source DB: PubMed Journal: Front Cardiovasc Med ISSN: 2297-055X
FIGURE 1The flowchart of the study design. We designed this study to explore potential risk factors such as circulating proteins for SCAD. This study comprised several steps of analysis. In the first step we identified SCAD-associated genes from five GWASs. Second, we identified BP-associated SNPs in the SCAD-associated genes from BP GWAS and then identified the shared genes for BP and SCAD. Third, we looked for pQTLs inside these genes using data from five pQTL studies. Fourth, for circulating protein levels that were significantly affected by both SCAD-associated and BP-associated SNPs, we applied four MR methods (IVW, MR-Egger, MR-PRESSO, and CAUSE) to examine whether they were genetically associated with BP, AAD, and aortic diameter. Finally, we inferred that genetic variants influence BP by disturbing circulating proteins, and then affecting the risk of SCAD and aortic dilation.
The SCAD loci collected from GWAS.
| Study | Loci | Number of SNPs with | Number of SNPs with | Top SNP | |
| rs ID | |||||
| ( | 1p32.1 | 7 | 0 | rs11207415 | 3.23E-06 |
| 1q21.2 | 291 | 149 | rs12740679 | 2.19E-12 | |
| 2p23.2 | 1 | 0 | rs4535004 | 8.32E-06 | |
| 2q33.2 | 3 | 0 | rs78377252 | 2.43E-06 | |
| 4q34.3 | 1 | 0 | rs2715408 | 7.64E-06 | |
| 5q23.2 | 1 | 0 | rs17839701 | 9.94E-06 | |
| 6p24.1 | 5 | 1 | rs9349379 | 4.36E-08 | |
| 6q22.1 | 3 | 0 | rs7775726 | 6.94E-06 | |
| 6q25.3 | 11 | 0 | rs78349783 | 1.03E-06 | |
| 12q13.3 | 14 | 5 | rs11172113 | 2.63E-08 | |
| 12q21.33 | 1 | 0 | rs2722224 | 6.71E-06 | |
| 12q23.2 | 3 | 0 | rs1014675 | 5.45E-06 | |
| 21q22.11 | 3 | 0 | rs28451064 | 1.19E-07 | |
| ( | 1q21.3 | – | 1 | rs4970935 | 3.26E-16 |
| 1q24.2 | 1 | – | rs6700122 | 1.40E-06 | |
| 3q22.3 | 1 | – | rs189056 | 7.53E-06 | |
| 4q34.3 | 1 | – | rs79603310 | 7.32E-05 | |
| 6p24.1 | – | 1 | rs9349379 | 4.59E-14 | |
| 8q24.3 | 1 | – | rs10095937 | 5.74E-05 | |
| 12q13.3 | – | 1 | rs11172113 | 1.42E-13 | |
| 15q21.1 | – | 1 | rs2015637 | 2.12E-09 | |
| 16q24.1 | 1 | – | rs67049921 | 5.40E-05 | |
| 21q22.11 | – | 1 | rs28451064 | 1.09E-09 | |
| ( | 1p32.1 | 1 | – | rs12402265 | 2.30E-07 |
| 2q32.1 | 1 | – | rs6741522 | 2.29E-06 | |
| 4q12 | – | 1 | rs6820391 | 2.36E-08 | |
| 6p24.1 | – | 1 | rs9349379 | 1.00E-11 | |
| 12q13.3 | 2 | – | rs11172113 | 1.90E-07 | |
| ( | 3p22.1 | – | 1 | rs2272007 | 1.15E-09 |
| 12q13.3 | – | 1 | rs11172113 | 2.74E-08 | |
| 15q21.1 | – | 1 | rs1042078 | 1.08E-10 | |
| ( | 15q21.1 | – | 5 | rs2118181 | 5.90E-12 |
| Total | 353 | 170 | – | – | |
Proteins related to BP-associated SNPs.
| SNP | Gene | CHR | Position (hg19) | GWAS | pQTL | |||
| Trait | Protein | Study | ||||||
| rs11776838 |
| 8 | 8794801 | 1.22E-08 | SBP | 5.23E-05 |
| ( |
| rs11776838 |
| 8 | 8794801 | 1.33E-12 | DBP | 5.23E-05 |
| ( |
| rs2186739 |
| 11 | 95327374 | 8.55E-11 | DBP | 2.48E-05 |
| ( |
| rs2186739 |
| 11 | 95327374 | 8.55E-11 | DBP | 7.98E-05 |
| ( |
| rs2156468 |
| 11 | 95327412 | 4.18E-08 | DBP | 2.41E-05 |
| ( |
| rs2508895 |
| 11 | 95321747 | 5.04E-11 | DBP | 2.34E-04 |
| ( |
| rs2254626 |
| 11 | 95327169 | 8.78E-11 | DBP | 8.21E-04 |
| ( |
| rs2186739 |
| 11 | 95327374 | 8.55E-11 | DBP | 8.45E-04 |
| ( |
| rs12323265 |
| 13 | 111014716 | 1.50E-08 | DBP | 4.55E-04 |
| ( |
| rs6077929 |
| 20 | 10819210 | 6.67E-12 | DBP | 6.27E-04 |
| ( |
| rs2251854 |
| 21 | 35056247 | 3.99E-06 | DBP | 8.58E-04 |
| ( |
| rs7281625 |
| 21 | 35066836 | 4.89E-06 | DBP | 9.74E-04 |
| ( |
| rs475259 |
| 8 | 8610267 | 2.68E-09 | SBP | 4.68E-05 |
| ( |
| rs475259 |
| 8 | 8610267 | 6.46E-10 | DBP | 4.68E-05 |
| ( |
| rs28446104 |
| 8 | 8795901 | 1.10E-11 | DBP | 2.95E-05 |
| ( |
| rs28446104 |
| 8 | 8795901 | 1.10E-11 | DBP | 2.75E-05 |
| ( |
| rs7819827 |
| 8 | 8797055 | 4.74E-08 | SBP | 4.90E-05 |
| ( |
| rs7819827 |
| 8 | 8797055 | 3.34E-12 | DBP | 4.90E-05 |
| ( |
| rs7844374 |
| 8 | 8798684 | 4.25E-08 | SBP | 3.80E-05 |
| ( |
| rs7844374 |
| 8 | 8798684 | 2.26E-12 | DBP | 3.80E-05 |
| ( |
| rs6601274 |
| 8 | 8799059 | 2.03E-08 | SBP | 2.88E-05 |
| ( |
| rs6601274 |
| 8 | 8799059 | 2.03E-08 | SBP | 3.89E-05 |
| ( |
| rs6601274 |
| 8 | 8799059 | 3.31E-12 | DBP | 3.89E-05 |
| ( |
| rs6601274 |
| 8 | 8799059 | 3.31E-12 | DBP | 2.88E-05 |
| ( |
| rs7837026 |
| 8 | 8801692 | 5.80E-09 | SBP | 3.80E-05 |
| ( |
| rs7837026 |
| 8 | 8801692 | 5.80E-09 | SBP | 3.55E-05 |
| ( |
| rs7837026 |
| 8 | 8801692 | 3.79E-13 | DBP | 3.55E-05 |
| ( |
| rs7837026 |
| 8 | 8801692 | 3.79E-13 | DBP | 3.80E-05 |
| ( |
| rs7823898 |
| 8 | 8803487 | 5.25E-11 | DBP | 7.59E-06 |
| ( |
| rs12930850 |
| 16 | 81602212 | 7.24E-09 | DBP | 3.24E-06 |
| ( |
| rs12929303 |
| 16 | 81602264 | 3.47E-09 | DBP | 3.24E-06 |
| ( |
| rs11649004 |
| 16 | 81602499 | 9.12E-09 | DBP | 1.66E-06 |
| ( |
| rs11644375 |
| 16 | 81602681 | 8.88E-09 | DBP | 5.50E-06 |
| ( |
| rs8045875 |
| 16 | 81603235 | 6.24E-09 | DBP | 5.25E-06 |
| ( |
| rs8045100 |
| 16 | 81603400 | 5.80E-09 | DBP | 3.09E-06 |
| ( |
| rs11640346 |
| 16 | 81603848 | 6.83E-09 | DBP | 6.03E-06 |
| ( |
| rs12931242 |
| 16 | 81604778 | 6.11E-09 | DBP | 2.09E-06 |
| ( |
| rs7198940 |
| 16 | 81605559 | 2.40E-08 | DBP | 4.27E-06 |
| ( |
| rs12918645 |
| 16 | 81606569 | 2.55E-08 | DBP | 4.07E-06 |
| ( |
| rs12924701 |
| 16 | 81607756 | 4.18E-09 | DBP | 3.31E-06 |
| ( |
| rs4483835 |
| 16 | 81607833 | 4.81E-09 | DBP | 2.51E-06 |
| ( |
| rs7196548 |
| 16 | 81609774 | 6.20E-09 | DBP | 1.91E-06 |
| ( |
| rs7199293 |
| 16 | 81614892 | 4.29E-08 | DBP | 1.78E-05 |
| ( |
| rs6134025 |
| 20 | 10743782 | 4.64E-10 | DBP | 2.29E-05 |
| ( |
| rs75612301 |
| 20 | 10744573 | 5.36E-10 | DBP | 4.07E-05 |
| ( |
| rs75612301 |
| 20 | 10744573 | 5.36E-10 | DBP | 2.00E-05 |
| ( |
| rs6134028 |
| 20 | 10744714 | 1.76E-09 | DBP | 3.09E-05 |
| ( |
| rs1009757 |
| 20 | 10828640 | 2.67E-14 | DBP | 3.72E-05 |
| ( |
| rs6074192 |
| 20 | 10829248 | 3.28E-14 | DBP | 4.17E-05 |
| ( |
CHR, Chromosome; GWAS, Genome-wide association study; QTL, Quantitative trait locus; SNP, Single nucleotide polymorphism.
Potential biological functions of proteins regulated by BP and SCAD-associated SNPs.
| Catalog | Term | Gene | Benjamini | |
| Molecular function | Serine-type endopeptidase activity |
| 4.90E-04 | 1.50E-02 |
| Molecular function | Serine-type peptidase activity |
| 6.50E-04 | 1.50E-02 |
| Molecular function | Serine hydrolase activity |
| 6.70E-04 | 1.50E-02 |
| Molecular function | Endopeptidase activity |
| 3.30E-03 | 5.60E-02 |
| Biological process | Collagen metabolic process |
| 5.70E-07 | 1.80E-04 |
| Biological process | Multicellular organismal macromolecule metabolic process |
| 6.90E-07 | 1.80E-04 |
| Biological process | Multicellular organism metabolic process |
| 1.20E-06 | 2.20E-04 |
| Cellular component | Extracellular space |
| 2.70E-03 | 6.20E-02 |
The causation between circulating cathepsin B level and BP and aortic diameter.
| Trait | pQTL study | Weighted median | IVW | MR-Egger | MR-PRESSO | ||||||||
| Beta | SE | Beta | SE | Beta | SE | Beta | SE | ||||||
| DBP | KORA | –0.0901 | 0.0405 | 0.0263 | –0.0829 | 0.0720 | 0.2496 | –0.3668 | 0.0822 | 8.15 × 10–6 | –0.0883 | 0.0757 | 0.3636 |
| INTERVAL | –0.1499 | 0.0453 | 9.25 × 10–4 | –0.0688 | 0.0520 | 0.1864 | –0.3057 | 0.0630 | 1.23 × 10–6 | –0.0937 | 0.0451 | 0.0580 | |
| SBP | KORA | –0.0131 | 0.0057 | 0.0213 | –0.0053 | 0.0098 | 0.5909 | –0.0437 | 0.0196 | 0.0257 | –0.0053 | 0.0098 | 0.6194 |
| INTERVAL | –0.0214 | 0.0064 | 8.56 × 10–4 | –0.0120 | 0.0077 | 0.1186 | –0.0197 | 0.0186 | 0.2908 | –0.0120 | 0.0077 | 0.1381 | |
| AA | KORA | –0.0247 | 0.0135 | 0.0676 | –0.0239 | 0.0148 | 0.1058 | –0.0950 | 0.0280 | 6.81 × 10–4 | –0.0238 | 0.0147 | 0.1811 |
| INTERVAL | –0.0596 | 0.0152 | 8.34 × 10–5 | –0.0397 | 0.0136 | 3.63 × 10–3 | –0.0234 | 0.0324 | 0.4712 | –0.0397 | 0.0136 | 9.38 × 10–3 | |
| DA | KORA | –0.0232 | 0.0105 | 0.0282 | –0.0221 | 0.0091 | 0.0153 | –0.0340 | 0.0248 | 0.1706 | –0.0221 | 0.0040 | 5.18 × 10–3 |
| INTERVAL | –0.0249 | 0.0134 | 0.0629 | –0.0106 | 0.0134 | 0.4293 | –0.0521 | 0.0303 | 0.0852 | –0.0106 | 0.0134 | 0.4397 | |
BP, Blood pressure; IVW, inverse-variance weighted; MR, Mendelian randomization; MR-PRESSO, MR pleiotropy residual sum and outlier; SE, Standard error.
FIGURE 2Association between circulating cathepsin B and SBP. Effect-size estimates and variant-level contribution to CAUSE test statistics for circulating cathepsin B and SBP.
The causation between BP and AAD and aortic diameter.
| X | Y | Method | Beta | SE | |
| DBP | AAD | Weighted median | 0.0028 | 0.0008 | 3.83E-04 |
| DBP | AAD | IVW | 0.0025 | 0.0006 | 1.26E-05 |
| DBP | AAD | MR-Egger | 0.0019 | 0.0020 | 0.3538 |
| DBP | AAD | MR-PRESSO | 0.0023 | 0.0005 | 4.99E-05 |
| DBP | AA diameter | Weighted median | 0.4463 | 0.0511 | 2.41E-18 |
| DBP | AA diameter | IVW | 0.4841 | 0.0560 | 5.73E-18 |
| DBP | AA diameter | MR-Egger | 0.5877 | 0.1965 | 2.78E-03 |
| DBP | AA diameter | MR-PRESSO | 0.4477 | 0.0446 | 8.81E-19 |
| DBP | DA diameter | Weighted median | 0.1732 | 0.0351 | 8.08E-07 |
| DBP | DA diameter | IVW | 0.1413 | 0.0355 | 7.03E-05 |
| DBP | DA diameter | MR-Egger | 0.0829 | 0.1143 | 0.4681 |
| DBP | DA diameter | MR-PRESSO | 0.1599 | 0.0299 | 1.78E-07 |
| SBP | AAD | Weighted median | 0.0010 | 0.0008 | 0.1987 |
| SBP | AAD | IVW | 0.0005 | 0.0006 | 0.4545 |
| SBP | AAD | MR-Egger | 0.0028 | 0.0021 | 0.1851 |
| SBP | AAD | MR-PRESSO | 0.0006 | 0.0006 | 0.3399 |
| SBP | AA diameter | Weighted median | 0.1634 | 0.0554 | 3.16E-03 |
| SBP | AA diameter | IVW | 0.0729 | 0.0734 | 0.3204 |
| SBP | AA diameter | MR-Egger | 0.0480 | 0.2403 | 0.8416 |
| SBP | AA diameter | MR-PRESSO | 0.1969 | 0.0498 | 1.19E-04 |
| SBP | DA diameter | Weighted median | 0.0454 | 0.0473 | 0.3374 |
| SBP | DA diameter | IVW | –0.0425 | 0.0574 | 0.4592 |
| SBP | DA diameter | MR-Egger | –0.1035 | 0.1878 | 0.5815 |
| SBP | DA diameter | MR-PRESSO | 0.0230 | 0.0440 | 0.6018 |
FIGURE 3Association between DBP and AA diameter. Effect-size estimates and variant-level contribution to CAUSE test statistics for DBP and AA diameter.