| Literature DB >> 35422168 |
Kun Yang1, Fengyan Wang1,2,3, Ke Li4, Guoxuan Peng2, Hua Yang1, Hong Xu2, Yang Xiang1, Hong Sun1,2.
Abstract
Background: The role of N6-methyladenosine (m6A)-related long non-coding RNAs (lncRNAs) in osteosarcoma (OS) has not been fully studied yet. We aimed to identify m6A-related lncRNAs that could act as prognostic biomarkers for OS.Entities:
Keywords: competing endogenous RNA; long non-coding RNA; m6A modification; osteosarcoma; prognosis
Mesh:
Substances:
Year: 2022 PMID: 35422168 PMCID: PMC9019337 DOI: 10.1177/15330338221085354
Source DB: PubMed Journal: Technol Cancer Res Treat ISSN: 1533-0338
Figure 1.Heat map representing the correlation between lncRNAs and m6A-related genes.
Figure 2.Screening for prognostic biomarkers and risk model construction. (A) Forest plot of univariate Cox regression analysis to screen for prognosis-related lncRNAs. (B) Forest plot of multivariate Cox regression analysis to screen for prognosis-related lncRNAs. (C) Heat map showing SNHG7 and SNHG12 expression levels in the training set. (D) Risk curve in the training set. (E) Kaplan–Meier curve in the training set. (F) ROC curve in TCGA training set. (G) Correlation between risk scores and clinical outcomes.
Figure 3.Validation of the risk model in the GEO dataset. (A) Heat map showing SNHG7 and SNHG12 expression levels in the validation set. (B) Risk curve in the validation set. (C) Kaplan–Meier curve in the validation set. (D) ROC curve in the GEO validation set.
Figure 4.Identification of pathways related to the risk model. (A) GSEA analysis in low-risk group. (B) GSEA analysis in high-risk group.
Figure 5.Relationship between risk score and immune cell infiltration in OS. ssGSEA was performed to analyze the enrichment score of 24 immune cell types in each sample. Pearson correlation between risk score and each immune cell type was calculated and visualized in a scatter plot.
Figure 6.Construction of nomogram for patients with OS. (A) Forest plot of univariate Cox regression analysis to screen for factors associated with prognosis. (B) Forest plot of multivariate Cox regression analysis to screen for factors associated with prognosis (C) Nomogram constructed with risk scores and metastasis. (D) Calibration plot of nomogram. (E) Decision curves for predicting 3-year survival. (F) Decision curves for predicting 5-year survival.
Figure 7.Establishment and analysis of the ceRNA network. (A) Construction of ceRNA network based on SNHG7 and SNHG12. (B) GO analysis of mRNAs in the ceRNA network. (C) KEGG analysis of mRNAs in the ceRNA network.