Literature DB >> 35415380

Estimating the AUC with a Graphical Lasso Method for High-dimensional Biomarkers with LOD.

Jirui Wang1, Yunpeng Zhao2, Liansheng Larry Tang3.   

Abstract

This manuscript estimates the area under the receiver operating characteristic curve (AUC) of combined biomarkers in a high-dimensional setting. We propose a penalization approach to the inference of precision matrices in the presence of the limit of detection. A new version of expectation-maximization algorithm is then proposed for the penalized likelihood, with the use of numerical integration and the graphical lasso method. The estimated precision matrix is then applied to the inference of AUCs. The proposed method outperforms the existing methods in numerical studies. We apply the proposed method to a data set of brain tumor study. The results show a higher accuracy on the estimation of AUC compared with the existing methods.

Entities:  

Keywords:  EM algorithm; Receiver operating characteristic curve; area under the ROC curve; graphical lasso; high-dimensional biomarkers

Year:  2021        PMID: 35415380      PMCID: PMC9000202          DOI: 10.1080/24709360.2021.1898731

Source DB:  PubMed          Journal:  Biostat Epidemiol        ISSN: 2470-9360


  21 in total

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Authors:  Albert Vexler; Aiyi Liu; Ekaterina Eliseeva; Enrique F Schisterman
Journal:  Biometrics       Date:  2007-11-19       Impact factor: 1.701

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Authors:  Joris Deelen; Johannes Kettunen; Krista Fischer; Ashley van der Spek; Stella Trompet; Gabi Kastenmüller; Andy Boyd; Jonas Zierer; Erik B van den Akker; Mika Ala-Korpela; Najaf Amin; Ayse Demirkan; Mohsen Ghanbari; Diana van Heemst; M Arfan Ikram; Jan Bert van Klinken; Simon P Mooijaart; Annette Peters; Veikko Salomaa; Naveed Sattar; Tim D Spector; Henning Tiemeier; Aswin Verhoeven; Melanie Waldenberger; Peter Würtz; George Davey Smith; Andres Metspalu; Markus Perola; Cristina Menni; Johanna M Geleijnse; Fotios Drenos; Marian Beekman; J Wouter Jukema; Cornelia M van Duijn; P Eline Slagboom
Journal:  Nat Commun       Date:  2019-08-20       Impact factor: 14.919

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