Literature DB >> 35411239

A pan-cancer analysis of GINS complex subunit 4 to identify its potential role as a biomarker in multiple human cancers.

Muhammad Usman1, Mohammad K Okla2, Hafiz Muhammad Asif3, Gehad AbdElgayed4, Fatima Muccee5, Shakira Ghazanfar6, Mukhtiar Ahmad1, Muhammad Junaid Iqbal7, Aamina Murad Sahar8, Ghania Khaliq9, Rabbia Shoaib10, Hira Zaheer1, Yasir Hameed1.   

Abstract

This study was initiated to explore the expression variation, clinical significance, and biological importance of the GINS complex subunit 4 (GINS4) in different human cancers as a shared biomarker via pan-cancer analysis through different platforms including UALCAN, Kaplan Meier (KM) plotter, TNMplot, GENT2, GEPIA, DriverDBv3, Human Protein Atlas (HPA), MEXPRESS, cBioportal, STRING, DAVID, MuTarge, Enrichr, TIMER, and CTD. Our findings have verified the up-regulation of GINS4 in 24 major subtypes of human cancers, and its overexpression was found to be substantially associated with poor overall survival (OS), relapse-free survival (RFs), and metastasis in ESCA, KIRC, LIHC, LUAD, and UCEC. This suggested that GINS4 plays a significant role in the development and progression of these five cancers. Furthermore, we noticed that GINS4 is also overexpressed in ESCA, KIRC, LIHC, LUAD, and UCEC patients with different clinicopathological characteristics. Enrichment analysis revealed the involvement of GINS4 associated genes in a variety of diverse GO and KEGG terms. We also explored few significant correlations between GINS4 expression and promoter methylation, genetic alterations, CNVs, other mutant genes, tumor purity, and immune cells infiltration. In conclusion, our results elucidated that GINS4 can serve as a shared diagnostic, prognostic biomarker, and a potential therapeutic target in ESCA, KIRC, LIHC, LUAD, and UCEC patients with different clinicopathological characteristics. AJCR
Copyright © 2022.

Entities:  

Keywords:  GINS4; biomarker; cancer; expression variations; tumor purity

Year:  2022        PMID: 35411239      PMCID: PMC8984884     

Source DB:  PubMed          Journal:  Am J Cancer Res        ISSN: 2156-6976            Impact factor:   6.166


  61 in total

1.  STRING: a database of predicted functional associations between proteins.

Authors:  Christian von Mering; Martijn Huynen; Daniel Jaeggi; Steffen Schmidt; Peer Bork; Berend Snel
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  Association of CNVs with methylation variation.

Authors:  Xinghua Shi; Saranya Radhakrishnan; Jia Wen; Jin Yun Chen; Junjie Chen; Brianna Ashlyn Lam; Ryan E Mills; Barbara E Stranger; Charles Lee; Sunita R Setlur
Journal:  NPJ Genom Med       Date:  2020-09-24       Impact factor: 8.617

3.  MYC activation cooperates with Vhl and Ink4a/Arf loss to induce clear cell renal cell carcinoma.

Authors:  Sean T Bailey; Aleisha M Smith; Jordan Kardos; Sara E Wobker; Harper L Wilson; Bhavani Krishnan; Ryoichi Saito; Hyo Jin Lee; Jing Zhang; Samuel C Eaton; Lindsay A Williams; Ujjawal Manocha; Dorien J Peters; Xinchao Pan; Thomas J Carroll; Dean W Felsher; Vonn Walter; Qing Zhang; Joel S Parker; Jen Jen Yeh; Richard A Moffitt; Janet Y Leung; William Y Kim
Journal:  Nat Commun       Date:  2017-06-08       Impact factor: 14.919

4.  GENT2: an updated gene expression database for normal and tumor tissues.

Authors:  Seung-Jin Park; Byoung-Ha Yoon; Seon-Kyu Kim; Seon-Young Kim
Journal:  BMC Med Genomics       Date:  2019-07-11       Impact factor: 3.063

5.  A Pan-Cancer Analysis of the Prognostic Value and Expression of Adenylate Cyclase 7 (ADCY7) in Human Tumors.

Authors:  Yu Zeng; Nanhong Li; Zhenzhen Zheng; Riken Chen; Wang Liu; Jinru Zhu; Mingqing Zeng; Junfen Cheng; Min Peng; Cheng Hong
Journal:  Int J Gen Med       Date:  2021-09-11

6.  The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists.

Authors:  Da Wei Huang; Brad T Sherman; Qina Tan; Jack R Collins; W Gregory Alvord; Jean Roayaei; Robert Stephens; Michael W Baseler; H Clifford Lane; Richard A Lempicki
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

7.  DriverDB: an exome sequencing database for cancer driver gene identification.

Authors:  Wei-Chung Cheng; I-Fang Chung; Chen-Yang Chen; Hsing-Jen Sun; Jun-Jeng Fen; Wei-Chun Tang; Ting-Yu Chang; Tai-Tong Wong; Hsei-Wei Wang
Journal:  Nucleic Acids Res       Date:  2013-11-07       Impact factor: 16.971

Review 8.  Cell cycle checkpoint in cancer: a therapeutically targetable double-edged sword.

Authors:  Roberta Visconti; Rosa Della Monica; Domenico Grieco
Journal:  J Exp Clin Cancer Res       Date:  2016-09-27

9.  Profiles of immune cell infiltration in head and neck squamous carcinoma.

Authors:  Bin Liang; Ye Tao; Tianjiao Wang
Journal:  Biosci Rep       Date:  2020-02-28       Impact factor: 3.840

10.  Expression Profile of GINS Complex Predicts the Prognosis of Pancreatic Cancer Patients.

Authors:  Fanqin Bu; Xiaojian Zhu; Xuan Yi; Chen Luo; Kang Lin; Jinfeng Zhu; Cegui Hu; Zitao Liu; Jiefeng Zhao; Chao Huang; Wenjun Zhang; Jun Huang
Journal:  Onco Targets Ther       Date:  2020-11-06       Impact factor: 4.147

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