| Literature DB >> 35401403 |
Yunchao Wang1, Changhe Shi1, Yusheng Li1, Wenkai Yu1, Sen Wei1, Yu Fan1, Chengyuan Mao1, Zhihua Yang1, Lulu Yu1, Zichen Zhao1, Shanshan Li1, Yuan Gao1, Yuming Xu1.
Abstract
Cerebral small vessel disease (CSVD) is a syndrome of clinical, neuroimaging, and neuropathological manifestations caused by disorders that affect small cerebral vessels. Although the pathogenesis of the disease remains unclear, some studies have demonstrated that genetic variants contribute to the development of CSVD. Our study aimed to explore the genetic characteristics of CSVD in the Chinese Han population. We enrolled 182 sporadic CSVD Chinese Han patients whose magnetic resonance imaging results showed grade 2-3 white matter lesions. Target region sequencing of seven monogenic CSVD-related genes, including NOTCH3, HTRA1, COL4A1, COL4A2, GLA, TREX1, and CTSA, was performed, and we identified pathogenic variants by screening the sequencing results and functional predictive analysis. All variants were predicted to be pathogenic by the SIFT Score, Polymorphism Phenotyping-2 score, Mutation Taster, Splice site score calculation, and MaxEntScan. All variants were validated in 300 healthy controls. In total, eight variants were identified in patients with CSVD, including five novel variants, c.1774C>T (NOTCH3), c.3784C>T (NOTCH3), c. 1207C>T (HTRA1), and c. 1274+1G> A (HTRA1), c.1937G>C (COL4A1) and three reported mutations. None of these variants were present in 300 healthy controls. No pathogenic variants in COL4A2, GLA, TREX1, and CTSA were detected. This study identified five novel variants in CSVD-related genes in Chinese Han patients with sporadic CSVD. Our results expand the genetic profile of CSVD.Entities:
Keywords: Chinese Han population; cerebral small vessel disease; genetic study; monogenic; mutations
Year: 2022 PMID: 35401403 PMCID: PMC8990910 DOI: 10.3389/fneur.2022.829438
Source DB: PubMed Journal: Front Neurol ISSN: 1664-2295 Impact factor: 4.003
Figure 1Filtration process and the remaining variants.
Eight pathogenic variants identified in CSVD-related genes in 7 SVD patients.
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| 8 | NA | c. 1261C>T | p. Arg421Cys | US | D | D | D | NF | NF | NF | NF | NF |
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| 11 | rs201118034 | c. 1630C>T | p. Arg544Cys | US | T | P | D | 0.0002 | 0.0003 | NF | 0.0003 | NF |
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| 11 | rs764148985 | c. 1774C>T | p. Arg592Cys | US | D | D | D | NF | NF | NF | 0.0001 | NF |
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| 19 | NA | c. 3091C>T | p. Arg1031Cys | US | T | D | D | NF | NF | NF | NF | NF |
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| 23 | NA | c. 3784C>T | p. Arg1262Cys | US | D | P | D | NF | NF | NF | NF | NF |
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| 8 | rs147459330 | c. 1207C>T | p. Arg403Trp | US | D | D | D | 0.001398 | 0.0005 | NF | 8.20E-06 | NF |
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| 8 | rs751805574 | c. 1274+1G>A | NA | P | NA | NA | D | NF | 8.24E-06 | NF | 4.06E-06 | NF |
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| 27 | rs532972509 | c.1937G>C | p. Gly646Ala | US | D | D | D | 0.0002 | 8.84E-06 | 7.7E-05 | 0.0004 | NF |
NA, Not Available; NF, Not Found.
The amino acid is based on the corresponding cDNA position according to the reference sequences of NOTCH3 (GRCh38, NM_000435), HTRA1(GRCh38, NM_002775), COL4A1(GRCh38, NM_001845).
P, Pathogenic; US, Uncertain significance.
D, Damaging; T, Tolerated.
P, Possibly Damaging; D, Probably Damaging.
D, Disease Causing.
Figure 2Sequencing chromatograms showed the variants of the NOTCH3, HTRA1, COL4A1.
The clinical characteristics of the 7 SVD patients with pathogenic variants.
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| 1 |
| c. 1261C>T | M | 51 | 3 | 3 | + | – | CI | HTN | 14 | 7 |
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| c. 1937G>C | |||||||||||
| 2 |
| c. 1630C>T | F | 63 | 3 | 3 | – | + | – | – | 10 | 4 |
| 3 |
| c. 1774C>T | M | 64 | 2 | 1 | + | + | CI | HTN | 16 | 5 |
| 4 |
| c. 3091C>T | F | 46 | 3 | 3 | + | – | – | – | 28 | 26 |
| 5 |
| c. 3784C>T | M | 76 | 3 | 3 | + | NA | CI | HTN | NA | NA |
| 6 |
| c. 1207C>T | F | 56 | 2 | 3 | + | + | CI | HTN, DM, CAD | 19 | 7 |
| 7 |
| c. 1274+1G>A | M | 66 | 3 | 2 | + | NA | CI, ICH | HTN, DM, HHcy | NA | NA |
M, man; F, female; CI, cerebral infarction; PWMH, Periventricular White matter hyperintensity; DWMH, Deep White matter hyperintensity; LI, Lacunar Infarcts; CMB, Cerebral Microbleeds; ICH, intracranial hemorrhage; HTN, hypertension; DM, diabetes mellitus; HHcy, hyperhomocysteinemia; CAD, coronary artery disease; MMSE, Mini-Mental State Examination; MoCa, Montreal Cognitive Assessment; NA, Not Available; + indicates present; – indicates absent.