Literature DB >> 35396486

CAMI II: identifying best practices and issues for metagenomics software.

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Year:  2022        PMID: 35396486     DOI: 10.1038/s41592-022-01419-0

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  4 in total

Review 1.  Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit.

Authors:  Fernando Meyer; Till-Robin Lesker; David Koslicki; Adrian Fritz; Alexey Gurevich; Aaron E Darling; Alexander Sczyrba; Andreas Bremges; Alice C McHardy
Journal:  Nat Protoc       Date:  2021-03-01       Impact factor: 13.491

Review 2.  A review of methods and databases for metagenomic classification and assembly.

Authors:  Florian P Breitwieser; Jennifer Lu; Steven L Salzberg
Journal:  Brief Bioinform       Date:  2019-07-19       Impact factor: 11.622

3.  Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

Authors:  Alexander Sczyrba; Peter Hofmann; Peter Belmann; David Koslicki; Stefan Janssen; Johannes Dröge; Ivan Gregor; Stephan Majda; Jessika Fiedler; Eik Dahms; Andreas Bremges; Adrian Fritz; Ruben Garrido-Oter; Tue Sparholt Jørgensen; Nicole Shapiro; Philip D Blood; Alexey Gurevich; Yang Bai; Dmitrij Turaev; Matthew Z DeMaere; Rayan Chikhi; Niranjan Nagarajan; Christopher Quince; Fernando Meyer; Monika Balvočiūtė; Lars Hestbjerg Hansen; Søren J Sørensen; Burton K H Chia; Bertrand Denis; Jeff L Froula; Zhong Wang; Robert Egan; Dongwan Don Kang; Jeffrey J Cook; Charles Deltel; Michael Beckstette; Claire Lemaitre; Pierre Peterlongo; Guillaume Rizk; Dominique Lavenier; Yu-Wei Wu; Steven W Singer; Chirag Jain; Marc Strous; Heiner Klingenberg; Peter Meinicke; Michael D Barton; Thomas Lingner; Hsin-Hung Lin; Yu-Chieh Liao; Genivaldo Gueiros Z Silva; Daniel A Cuevas; Robert A Edwards; Surya Saha; Vitor C Piro; Bernhard Y Renard; Mihai Pop; Hans-Peter Klenk; Markus Göker; Nikos C Kyrpides; Tanja Woyke; Julia A Vorholt; Paul Schulze-Lefert; Edward M Rubin; Aaron E Darling; Thomas Rattei; Alice C McHardy
Journal:  Nat Methods       Date:  2017-10-02       Impact factor: 28.547

Review 4.  Clinical metagenomics.

Authors:  Charles Y Chiu; Steven A Miller
Journal:  Nat Rev Genet       Date:  2019-06       Impact factor: 53.242

  4 in total

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