Literature DB >> 35394774

Coarse-Grained Simulations Suggest Potential Competing Roles of Phosphoinositides and Amphipathic Helix Structures in Membrane Curvature Sensing of the AP180 N-Terminal Homology Domain.

Alexis Belessiotis-Richards1,2,3, Andreas H Larsen4, Stuart G Higgins1,2,3, Molly M Stevens1,2,3, Alfredo Alexander-Katz5.   

Abstract

The generation and sensing of membrane curvature by proteins has become of increasing interest to researchers with multiple mechanisms, from hydrophobic insertion to protein crowding, being identified. However, the role of charged lipids in the membrane curvature-sensing process is still far from understood. Many proteins involved in endocytosis bind phosphatidylinositol 4,5-bisphosphate (PIP2) lipids, allowing these proteins to accumulate at regions of local curvature. Here, using coarse-grained molecular dynamics simulations, we study the curvature-sensing behavior of the ANTH domain, a protein crucial for endocytosis. We selected three ANTH crystal structures containing either an intact, split, or truncated terminal amphipathic helix. On neutral membranes, the ANTH domain has innate curvature-sensing ability. In the presence of PIP2, however, only the domain with an intact helix senses curvature. Our work sheds light on the role of PIP2 and its modulation of membrane curvature sensing by proteins.

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Year:  2022        PMID: 35394774      PMCID: PMC9036517          DOI: 10.1021/acs.jpcb.2c00239

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   3.466


  45 in total

1.  GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation.

Authors:  Berk Hess; Carsten Kutzner; David van der Spoel; Erik Lindahl
Journal:  J Chem Theory Comput       Date:  2008-03       Impact factor: 6.006

Review 2.  Tickets to ride: selecting cargo for clathrin-regulated internalization.

Authors:  Linton M Traub
Journal:  Nat Rev Mol Cell Biol       Date:  2009-09       Impact factor: 94.444

3.  EnCurv: Simple Technique of Maintaining Global Membrane Curvature in Molecular Dynamics Simulations.

Authors:  Semen Yesylevskyy; Himanshu Khandelia
Journal:  J Chem Theory Comput       Date:  2021-01-29       Impact factor: 6.006

Review 4.  Membrane remodeling in clathrin-mediated endocytosis.

Authors:  Volker Haucke; Michael M Kozlov
Journal:  J Cell Sci       Date:  2018-09-03       Impact factor: 5.285

Review 5.  Actin and endocytosis in budding yeast.

Authors:  Bruce L Goode; Julian A Eskin; Beverly Wendland
Journal:  Genetics       Date:  2015-02       Impact factor: 4.562

6.  Membrane fission is promoted by insertion of amphipathic helices and is restricted by crescent BAR domains.

Authors:  Emmanuel Boucrot; Adi Pick; Gamze Çamdere; Nicole Liska; Emma Evergren; Harvey T McMahon; Michael M Kozlov
Journal:  Cell       Date:  2012-03-30       Impact factor: 41.582

7.  Intrinsically disordered proteins drive membrane curvature.

Authors:  David J Busch; Justin R Houser; Carl C Hayden; Michael B Sherman; Eileen M Lafer; Jeanne C Stachowiak
Journal:  Nat Commun       Date:  2015-07-24       Impact factor: 14.919

8.  Evolving models for assembling and shaping clathrin-coated pits.

Authors:  Zhiming Chen; Sandra L Schmid
Journal:  J Cell Biol       Date:  2020-09-07       Impact factor: 10.539

9.  Pitfalls of the Martini Model.

Authors:  Riccardo Alessandri; Paulo C T Souza; Sebastian Thallmair; Manuel N Melo; Alex H de Vries; Siewert J Marrink
Journal:  J Chem Theory Comput       Date:  2019-09-24       Impact factor: 6.006

10.  Coarse-Grained Simulations Suggest the Epsin N-Terminal Homology Domain Can Sense Membrane Curvature without Its Terminal Amphipathic Helix.

Authors:  Alexis Belessiotis-Richards; Stuart G Higgins; Mark S P Sansom; Alfredo Alexander-Katz; Molly M Stevens
Journal:  ACS Nano       Date:  2020-12-10       Impact factor: 18.027

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  1 in total

Review 1.  Molecular Dynamics Simulations of Curved Lipid Membranes.

Authors:  Andreas Haahr Larsen
Journal:  Int J Mol Sci       Date:  2022-07-22       Impact factor: 6.208

  1 in total

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