Literature DB >> 35394611

Phylodynamics of classical swine fever virus in Brazil.

Antônio Augusto Fonseca Júnior1,2, Mateus Laguardia-Nascimento3, Aline Aparecida Silva Barbosa3, Valdenia Lopes da Silva Gonçalves3, Tânia Rosária Pereira Freitas3, Anselmo Vasconcelos Rivetti Júnior3, Marcelo Fernandes Camargos3.   

Abstract

The classical swine fever virus is the etiologic agent of one of the diseases with the greatest impact on swine farming worldwide. An extensive area of Brazil is considered free of the disease, but some states in Northeast Brazil have registered outbreaks since 2001. The objective of this study was to analyze the genetic variations of the virus and its spread over time and space. Partial sequences of the viral E2 protein obtained from samples collected during the Brazilian outbreaks were compared with sequences from the GenBank database (NCBI). The results demonstrated the continuous presence of the virus in the state of Ceará, with diffusion to at least two other states. The Brazilian Northeast virus presents specific polymorphisms that separate it from viruses isolated in other countries.
© 2022. The Author(s) under exclusive licence to Sociedade Brasileira de Microbiologia.

Entities:  

Keywords:  Classical swine fever; Evolution; Hog cholera; Phylogeny

Mesh：

Substances：

Year:  2022        PMID： 35394611      PMCID： PMC9151941          DOI： 10.1007/s42770-022-00724-2

Source DB:  PubMed          Journal:  Braz J Microbiol        ISSN： 1517-8382            Impact factor:   2.214


  23 in total

1.  DnaSP, DNA polymorphism analyses by the coalescent and other methods.

Authors:  Julio Rozas; Juan C Sánchez-DelBarrio; Xavier Messeguer; Ricardo Rozas
Journal:  Bioinformatics       Date:  2003-12-12       Impact factor: 6.937

2.  Datamonkey: rapid detection of selective pressure on individual sites of codon alignments.

Authors:  Sergei L Kosakovsky Pond; Simon D W Frost
Journal:  Bioinformatics       Date:  2005-02-15       Impact factor: 6.937

3.  Prediction of linear B-cell epitopes using amino acid pair antigenicity scale.

Authors:  J Chen; H Liu; J Yang; K-C Chou
Journal:  Amino Acids       Date:  2007-01-26       Impact factor: 3.520

4.  Predicting flexible length linear B-cell epitopes.

Authors:  Yasser El-Manzalawy; Drena Dobbs; Vasant Honavar
Journal:  Comput Syst Bioinformatics Conf       Date:  2008

5.  Classical swine fever virus is genetically stable in vitro and in vivo.

Authors:  H Vanderhallen; C Mittelholzer; M A Hofmann; F Koenen; C Mittelhozer
Journal:  Arch Virol       Date:  1999       Impact factor: 2.574

6.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

7.  Identification and genetic characterization of classical swine fever virus isolates in Brazil: a new subgenotype.

Authors:  Marta N F Silva; Diogo M F Silva; Adriana S Leite; Ana L V Gomes; Antonio C Freitas; Jose W Pinheiro-Junior; Roberto S Castro; Andre L S Jesus
Journal:  Arch Virol       Date:  2016-11-05       Impact factor: 2.574

Review 8.  Genetic typing of classical swine fever virus.

Authors:  D J Paton; A McGoldrick; I Greiser-Wilke; S Parchariyanon; J Y Song; P P Liou; T Stadejek; J P Lowings; H Björklund; S Belák
Journal:  Vet Microbiol       Date:  2000-04-13       Impact factor: 3.293

9.  Clustering of classical swine fever virus isolates by codon pair bias.

Authors:  Immanuel Leifer; Dirk Hoeper; Sandra Blome; Martin Beer; Nicolas Ruggli
Journal:  BMC Res Notes       Date:  2011-11-29

10.  Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach.

Authors:  Adi Stern; Adi Doron-Faigenboim; Elana Erez; Eric Martz; Eran Bacharach; Tal Pupko
Journal:  Nucleic Acids Res       Date:  2007-06-22       Impact factor: 16.971
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