| Literature DB >> 35394490 |
Jinglin Lu1, Li Huang1, Limei Sun1, Songshan Li1, Zhaotian Zhang1, Zhaoxin Jiang1, Jiaqing Li1, Xiaoyan Ding1.
Abstract
Purpose: The purpose of this study was to establish a genotype-phenotype correlation of familial exudative vitreoretinopathy (FEVR) caused by FZD4 gene mutations.Entities:
Mesh:
Substances:
Year: 2022 PMID: 35394490 PMCID: PMC8994167 DOI: 10.1167/iovs.63.4.7
Source DB: PubMed Journal: Invest Ophthalmol Vis Sci ISSN: 0146-0404 Impact factor: 4.799
Demographic Data of the Probands and Family Members With FZD4 Mutations
| Probands | Family Members |
| |
|---|---|---|---|
| Number | 84 | 50 | 0.279 |
| Male, | 54 | 27 | |
| Female, | 30 | 23 | |
| Age, y, mean ± SD | 7.6 ± 9.9 | 30.0 ± 13.4 | <0.001 |
| FEVR stage | <0.001 | ||
| 1 | 29 | 45 | |
| 2 | 15 | 28 | |
| 3 | 19 | 12 | |
| 4 | 55 | 3 | |
| 5 | 12 | 4 | |
| Others | 38 | 1 | |
| Asymmetry | <0.001 | ||
| Low | 34 | 44 | |
| Medium | 9 | 6 | |
| High | 18 | 0 | |
| Retinal folds, | 55 (32.7) | 3 (2.9) | <0.0001 |
| Retinal detachment, | 18 (10.7) | 5 (4.9) | 0.118 |
| TEMPVIA | 0.079 | ||
| Obtuse type | 18 (10.7%) | 4 (3.9%) | |
| Acute type | 15 (8.9%) | 6 (5.9%) | |
| Foveal hypoplasia | 28 (16.7%) | 0 (0%) | <0.0001 |
The P values were calculated by Student's t-test. The rest of the P values were calculated by the chi-square test, for those columns with case number <5, Fisher exact test was used.
FEVR, familial exudative vitreoretinopathy; TEMPVIA, temporal midperipheral vitreoretinal interface abnormality.
A low asymmetry referred to a difference of one grade or none between contralateral eyes. A medium asymmetry referred to a difference of two grades between contralateral eyes. A high asymmetry referred to a difference of three, four, or five grades between contralateral eyes.
Pathogenic Variants Detected in FZD4
| No | Number | Exon | Nucleotide Changes | Protein Change | Type | 1000G | ExAC | SIFT | Poly-Phen2 | CADD | REVEL | Mutation Taster | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | 1 | c.49_50insCCCGGGGGCG | p.Val17Alafs*116 | Insertion | 0 | 0 | – | – | – | – | – | Novel |
| 2 | 2 | 1 | c.107G>A | p.Gly36Asp | Missense | 0 | 0 | D | B | 0.51388 | 0.374 | A |
|
| 3 | 2 | 1 | c.118G>T | p.Glu40* | Nonsense | 0 | 0 | T | P | 0.09039 | 0.511 | – |
|
| 4 | 1 | 1 | c.133T>C | p.Cys45Arg | Missense | 0 | 0 | D | D | 0.80669 | 0.967 | D |
|
| 5 | 1 | 1 | c.134G>A | p.Cys45Tyr | Missense | 0 | 0 | D | D | 0.88401 | 0.944 | D |
|
| 6 | 1 | 1 | c.133T>A | p.Cys45Ser | Missense | 0 | 0 | D | P | 0.72502 | 0.95 | D |
|
| 7 | 1 | 1 | c.141dup | p.Ile48Hisfs*82 | Insertion | 0 | 0 | – | – | – | – | – | Novel |
| 8 | 1 | 1 | c.158G>C | p.Cys53Ser | Missense | 0 | 0 | D | D | 0.82476 | 0.986 | D |
|
| 9 | 1 | 1 | c.169G>C | p.Gly57Arg | Missense | 0 | 0 | D | D | 0.88966 | 0.93319 | D | Novel |
| 10 | 1 | 1 | c.182C>T | p.Thr61Ile | Missense | 0 | 0 | D | D | 0.87976 | 0.93 | D |
|
| 11 | 3 | 1 | c.205C>T | p.His69Tyr | Missense | 0.0002 | 0.000562 | D | B | 0.76753 | 0.663 | A |
|
| 12 | 1 | 1 | c.223G>A | p.Ala75Thr | Missense | 0 | 0.000009 | D | D | 0.9522 | 0.875 | D |
|
| 13 | 1 | 1 | c.260del | p.Gln87Argfs*46 | Deletion | 0 | 0 | – | – | – | – | – | Novel |
| 14 | 1 | 1 | c.264C>A | p.Tyr88* | Nonsense | 0 | 0 | – | – | – | – | – |
|
| 15 | 1 | 1 | c.268T>C | p.Cys90Arg | Missense | 0 | 0 | D | D | 0.85883 | 0.965 | D |
|
| 16 | 1 | 1 | c.284A>T | p.Gln95Leu | Missense | 0 | 0 | D | B | 0.50873 | 0.487 | D | Novel |
| 17 | 1 | 1 | c.285G>A | p.Gln95Gln | Synonymous | 0 | 0 | – | – | – | – | – | Novel |
| 18 | 12 | 2 | c.313A>G | p.Met105Val | Missense | 0 | 0.000017 | T | P | 0.09039 | 0.511 | A |
|
| 19 | 1 | 2 | c.316_317dup | p.Thr107Alafs*27 | Frameshift | 0 | 0 | – | – | – | – | – | Novel |
| 20 | 1 | 2 | c.341T>C | p.Ile114Thr | Missense | 0 | 0 | D | P | 0.71563 | 0.851 | D |
|
| 21 | 1 | 2 | c.351C>G | p.Cys117Trp | Missense | 0 | 0 | D | D | 0.39612 | 0.563 | D | Novel |
| 22 | 1 | 2 | c.380del | p.Arg127Profs*6 | Deletion | 0 | 0 | – | – | – | – | – |
|
| 23 | 1 | 2 | c.451C>T | p.Gln151* | Nonsense | 0 | 0 | – | – | – | – | – | Novel |
| 24 | 1 | 2 | c.456C>A | p.Asn152Lys | Missense | 0 | 0 | T | D | 0.23802 | 0.533 | D | Novel |
| 25 | 1 | 2 | c.485del | p.Pro162Glnfs*33 | Deletion | 0 | 0 | – | – | – | – | – | Novel |
| 26 | 1 | 2 | c.541T>C | p.Cys181Arg | Missense | 0 | 0 | T | B | 0.4704 | 0.77591 | A |
|
| 27 | 1 | 2 | c.551_552del | p.Val184Glyfs*5 | Deletion | 0 | 0 | – | – | – | – | – | Novel |
| 28 | 1 | 2 | c.579G>A | p.Trp193* | Nonsense | 0 | 0 | – | – | – | – | – | Novel |
| 29 | 1 | 2 | c.631T>C | p.Tyr211His | Missense | 0 | 0 | D | B | 0.43228 | 0.35 | D |
|
| 30 | 1 | 2 | c.716T>C | p.Leu239Pro | Missense | 0 | 0 | D | D | 0.70572 | 0.727 | D |
|
| 31 | 1 | 2 | c.757C>T | p.Arg253Cys | Missense | 0 | 0 | D | D | 0.87568 | 0.595 | D |
|
| 32 | 1 | 2 | c.930C>G | p.Tyr310* | Nonsense | 0 | 0 | – | – | – | – | – | Novel |
| 33 | 2 | 2 | c.957G>A | p.Trp319* | Nonsense | 0 | 0 | – | – | – | – | – |
|
| 34 | 1 | 2 | c.974T>G | p.Leu325Arg | Missense | 0 | 0 | D | D | 0.70193 | 0.76 | D | Novel |
| 35 | 1 | 2 | c.975_978del | p.Thr326Glyfs*31 | Deletion | 0 | 0 | – | – | – | – | – |
|
| 36 | 1 | 2 | c.1000-1001insCTCA | p.Lys334Thrfs*6 | Insertion | 0 | 0 | – | – | – | – | – | Novel |
| 37 | 1 | 2 | c.1034_1054del | p.Ser345_Ala351del | Deletion | 0 | 0 | – | – | – | – | – |
|
| 38 | 1 | 2 | c.1155del | p.Asp385Glufs*46 | Frameshift | 0 | 0 | – | – | – | – | – | Novel |
| 39 | 1 | 2 | c.1181C>T | p.Pro394Leu | Missense | 0 | 0 | D | D | 0.79179 | 0.896 | D | Novel |
| 40 | 10 | 2 | c.1282_1285del | p.Asp428Serfs*2 | Deletion | 0 | 0 | – | – | – | – | – |
|
| 41 | 1 | 2 | c.1293_1296del | p.Glu431Aspfs*2 | Deletion | 0 | 0 | – | – | – | – | – | Novel |
| 42 | 1 | 2 | c.1310T>C | p.Ile437Thr | Missense | 0 | 0 | D | D | 0.64757 | 0.943 | D |
|
| 43 | 1 | 2 | c.1328_1332del | p.Leu443Hisfs*14 | Deletion | 0 | 0 | – | – | – | – | – | Novel |
| 44 | 1 | 2 | c.1475del | p.Gly492Alafs*21 | Deletion | 0 | 0 | – | – | – | – | – |
|
| 45 | 1 | 2 | c.1478-79insAT | p.Met493Ilefs*21 | Deletion | 0 | 0 | – | – | – | – | – | Novel |
| 46 | 1 | 2 | c.1492_1502del | p.Ala498Serfs*33 | Deletion | 0 | 0 | – | – | – | – | – | Novel |
| 47 | 1 | 2 | c.1498del | p.Thr500Leufs*13 | Deletion | 0 | 0 | – | – | – | – | – |
|
| 48 | 6 | 2 | c.1589G>A | p.Gly530Glu | Missense | 0 | 0.000173 | D | P | 0.46364 | 0.787 | D |
|
| 49 | 1 | Intron 1 | c.286-3G>C | – | Splicing | 0 | 0 | – | – | – | – | Splice site change | Novel |
| 50 | 4 | 1-2 | CNV (exon1-2 deletion) | – | CNV | 0 | 0 | – | – | – | – | – |
|
| 51 | 1 | Intron 1 | c.286-2A>G | – | Splicing | 0 | 0 | – | – | – | – | Splice site change | Novel |
T, tolerant; B, benign; D, damaging or disease causing; P, possibly damaging, A, disease causing automatic; N, polymorphism; P, polymorphism.
CNV, copy number variants.
Figure 1.Schematic diagram of FZD4 domains and mutations detected in this study.
Figure 2.FEVR stages of bilateral eyes. (A) FEVR stages of all the probands. (B) FEVR stages between probands and family members. OD, right eye; OS, left eye.
Figure 3.Fundus images of probands and family members. A, B, and C are from the family DX684 with the c.313A>G (p.Met105Val) variant. (A) Fundus image and fundus fluorescein angiography (FFA) of the proband DX684 indicates prominent macular dragging and ectopic macula. (B) FFA of the brother of DX684 indicates supernumerary branching. (C) FFA of the mother of DX684 indicates supernumerary branching. (D) FFA of the mother of DX684 was unremarkable. D and E are from the family DX342 with the c.1034_1054del (p.Ser345_Ala351del) variant. D FFA of the proband DX342 indicates macular dragging, ectopic macula, supernumerary branching, and coloboma of the choroid. (E) FFA of the father of DX342 indicates peripheral avascular retinal area and supernumerary branching. F and G are from the family XDW41 with the c.1000-1001insCTCA (p.Lys334Thrfs*6) variant. (F) Fundus images of the proband XDW41 indicate retinal folds in the right eye, macular dragging, and ectopic macula in the left eye. (G) FFA of the mother of XDW41 indicates supernumerary branching.
Phenotype Comparison Between Probands and Parents
| Stages Difference | 0 | 1 | 2 | 3 | 4 | 5 |
|---|---|---|---|---|---|---|
| Stages difference between probands and mothers, | 1 | 5 | 8 | 0 | 1 | 1 |
| Stages difference between probands and fathers, | 0 | 7 | 0 | 1 | 1 | 1 |
|
| 0.015 |
Phenotypes Comparison Between Probands With the Same Mutations
| Mutation | c.1589G>A | c.1282_1285del | c.313A>G | c.205C>T | CNV (Exon1-2) |
|---|---|---|---|---|---|
| No. of probands | 6 | 10 | 12 | 3 | 4 |
| Stages | |||||
| 0 | 0 | 0 | 0 | 0 | 0 |
| 1 | 0 | 1 | 0 | 0 | 0 |
| 2 | 1 | 0 | 0 | 0 | 0 |
| 3 | 1 | 1 | 2 | 0 | 0 |
| 4 | 2 | 5 | 4 | 1 | 4 |
| 5 | 0 | 2 | 1 | 0 | 0 |
| Others | 2 | 1 | 5 | 0 | 0 |
Others, rhegmatogenous retinal detachment or vitreous hemorrhage which cannot classify the FEVR stages.
Figure 4.Representative fundus images of probands with the same variant, 1589G>A (Gly530Glu). (A) FFA of QT2446 indicates rhegmatogenous retinal detachment. (B) FFA of QT2341 indicates supernumerary branching.
Phenotype Comparison Between Different FZD4 Domains
| Domains | Others, | CRD, | 7 Transmembrane Domains, | Amino Acids 495–537, |
|
|---|---|---|---|---|---|
| Stages | 0.725 | ||||
| 1 | 5 | 8 | 9 | 2 | |
| 2 | 2 | 5 | 5 | 4 | |
| 3 | 0 | 8 | 7 | 2 | |
| 4 | 8 | 18 | 13 | 4 | |
| 5 | 1 | 6 | 3 | 1 | |
| Folds | 0.657 | ||||
| Yes | 8 | 30 | 29 | 10 | |
| No | 8 | 16 | 14 | 5 | |
| Retinal detachment | 0.574 | ||||
| Yes | 13 | 47 | 37 | 13 | |
| No | 1 | 7 | 6 | 3 | |
| TEMPVIA | 0.740 | ||||
| Yes | 3 | 5 | 7 | 0 | |
| No | 3 | 4 | 7 | 2 | |
| Foveal hypoplasia | 1.000 | ||||
| Yes | 2 | 5 | 4 | 0 | |
| No | 4 | 11 | 8 | 2 |
TEMPVIA, temporal mid-peripheral vitreoretinal interface abnormality.
CRD, cysteine-rich domain.