Literature DB >> 35394234

Relationship between nitrifying microorganisms and other microorganisms residing in the maize rhizosphere.

Oluwatobi Esther Ayiti1, Ayansina Segun Ayangbenro1, Olubukola Oluranti Babalola2.   

Abstract

The microbial network of rhizosphere is unique as a result of root exudate. Insights into the relationship that exists with the energy metabolic functional groups will help in biofertilizer production. We hypothesize that there exists a relationship between nitrifying microorganisms and other energy metabolic functional microbial groups in the maize rhizosphere across different growth stages. Nucleospin soil DNA extraction kit was used to extract DNA from soil samples collected from maize rhizosphere. The 16S metagenomics sequencing was carried out on Illumina Miseq. The sequence obtained was analyzed on MG-RAST. Nitrospira genera were the most abundant in the nitrifying community. Nitrifying microorganisms were more than each of the studied functional groups except for nitrogen-fixing bacteria. Also, majority of the microorganisms were noticed at the fruiting stage and there was variation in the microbial structure across different growth stages. The result showed that there exists a substantial amount of both negative and positive correlation within the nitrifying microorganisms, and between them and other energy metabolic functional groups. The knowledge obtained from this study will help improve the growth and development of maize through modification of the rhizosphere microbial community structure.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Carbon fixation; Methane-oxidizing bacteria; Nitrogen fixing bacteria; Predictive functional analysis; Root exudate

Mesh:

Substances:

Year:  2022        PMID: 35394234     DOI: 10.1007/s00203-022-02857-2

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  21 in total

1.  BLAT--the BLAST-like alignment tool.

Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

2.  Rhizosphere microbial community structure at different maize plant growth stages and root locations.

Authors:  Lilia Cavaglieri; Julieta Orlando; Miriam Etcheverry
Journal:  Microbiol Res       Date:  2007-05-23       Impact factor: 5.415

3.  Propagation and characterization of viable arbuscular mycorrhizal fungal spores within maize plant (Zea mays L.).

Authors:  Oluwaseun Adeyinka Fasusi; Adenike Eunice Amoo; Olubukola Oluranti Babalola
Journal:  J Sci Food Agric       Date:  2021-03-31       Impact factor: 3.638

Review 4.  Metagenomics methods for the study of plant-associated microbial communities: A review.

Authors:  Ayomide Emmanuel Fadiji; Olubukola Oluranti Babalola
Journal:  J Microbiol Methods       Date:  2020-02-04       Impact factor: 2.363

5.  Plant growth rate and nitrogen uptake shape rhizosphere bacterial community composition and activity in an agricultural field.

Authors:  Bryan D Emmett; Daniel H Buckley; Laurie E Drinkwater
Journal:  New Phytol       Date:  2019-10-30       Impact factor: 10.151

6.  Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data.

Authors:  Kathrin P Aßhauer; Bernd Wemheuer; Rolf Daniel; Peter Meinicke
Journal:  Bioinformatics       Date:  2015-05-07       Impact factor: 6.937

7.  Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

Authors:  Morgan G I Langille; Jesse Zaneveld; J Gregory Caporaso; Daniel McDonald; Dan Knights; Joshua A Reyes; Jose C Clemente; Deron E Burkepile; Rebecca L Vega Thurber; Rob Knight; Robert G Beiko; Curtis Huttenhower
Journal:  Nat Biotechnol       Date:  2013-08-25       Impact factor: 54.908

Review 8.  Anaerobic oxidation of methane: an "active" microbial process.

Authors:  Mengmeng Cui; Anzhou Ma; Hongyan Qi; Xuliang Zhuang; Guoqiang Zhuang
Journal:  Microbiologyopen       Date:  2014-12-22       Impact factor: 3.139

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

Review 10.  The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems.

Authors:  Christos Gougoulias; Joanna M Clark; Liz J Shaw
Journal:  J Sci Food Agric       Date:  2014-03-06       Impact factor: 3.638

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