| Literature DB >> 35391720 |
Shreyas V Kumbhare1, Patricia A Francis-Lyon1,2, Dashyanng Kachru1,2, Tejaswini Uday1, Carmel Irudayanathan1, Karthik M Muthukumar1, Roshni R Ricchetti1, Simitha Singh-Rambiritch1, Juan Ugalde3, Parambir S Dulai4, Daniel E Almonacid1, Ranjan Sinha1.
Abstract
Diet and lifestyle-related illnesses including functional gastrointestinal disorders (FGIDs) and obesity are rapidly emerging health issues worldwide. Research has focused on addressing FGIDs via in-person cognitive-behavioral therapies, diet modulation and pharmaceutical intervention. Yet, there is paucity of research reporting on digital therapeutics care delivering weight loss and reduction of FGID symptom severity, and on modeling FGID status and symptom severity reduction including personalized genomic SNPs and gut microbiome signals. Our aim for this study was to assess how effective a digital therapeutics intervention personalized on genomic SNPs and gut microbiome signals was at reducing symptomatology of FGIDs on individuals that successfully lost body weight. We also aimed at modeling FGID status and FGID symptom severity reduction using demographics, genomic SNPs, and gut microbiome variables. This study sought to train a logistic regression model to differentiate the FGID status of subjects enrolled in a digital therapeutics care program using demographic, genetic, and baseline microbiome data. We also trained linear regression models to ascertain changes in FGID symptom severity of subjects at the time of achieving 5% or more of body weight loss compared to baseline. For this we utilized a cohort of 177 adults who reached 5% or more weight loss on the Digbi Health personalized digital care program, who were retrospectively surveyed about changes in symptom severity of their FGIDs and other comorbidities before and after the program. Gut microbiome taxa and demographics were the strongest predictors of FGID status. The digital therapeutics program implemented, reduced the summative severity of symptoms for 89.42% (93/104) of users who reported FGIDs. Reduction in summative FGID symptom severity and IBS symptom severity were best modeled by a mixture of genomic and microbiome predictors, whereas reduction in diarrhea and constipation symptom severity were best modeled by microbiome predictors only. This preliminary retrospective study generated diagnostic models for FGID status as well as therapeutic models for reduction of FGID symptom severity. Moreover, these therapeutic models generate testable hypotheses for associations of a number of biomarkers in the prognosis of FGIDs symptomatology.Entities:
Keywords: IBS – irritable bowel syndrome; constipation; diarrhea; digital therapeutics; functional gastrointestinal disorders (FGIDs); multi-omic models; non-pharmacological treatment
Year: 2022 PMID: 35391720 PMCID: PMC8983270 DOI: 10.3389/fmicb.2022.826916
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
FIGURE 1Study design flowchart.
Distribution and demographics of FGID and non-FGID groups in the study.
| Descriptor variable | FGID group ( | Non-FGID group ( | |
| Gender, | |||
| Male | 12 (11.54%) | 22 (30.14%) |
|
| Female | 92 (88.46%) | 51 (69.86%) | |
| Age, in years [median ( | 49 (11.92) | 51 (12.25) | |
| BMI closest to gut biome sampling [median ( | 31.17 (7.37) | 33.51 (7.50) |
|
| Alcohol consumption, | 62 (59.61%) | 52 (71.23%) | 0.112 |
| Recreational drugs (including tobacco smoking), | 19 (19.2%) | 16 (22.5%) | 0.595 |
Functional gastrointestinal disorders (FGID) vs. non-FGID logistic model: demographics + genomics (D + G).
| Variable | OR | 2.5% CI | 97.5% CI |
| Gender | 3.255 | 1.421 | 7.856 |
| Caffeine metabolism (rs2472297), Risk Allele C | 0.447 | 0.211 | 0.888 |
| Gluten sensitivity (rs2187668), Risk Allele T | 2.926 | 1.140 | 8.269 |
| Peanut allergy (rs9275596), Risk Allele C | 0.556 | 0.323 | 0.935 |
McFadden pseudo R
Functional gastrointestinal disorders vs. non-FGID logistic model: demographics + microbiome (D + M).
| Variable | OR | 2.5% CI | 97.5% CI |
| Gender | 2.334 | 1.213 | 4.686 |
| 1.193 | 1.039 | 1.391 | |
|
| 1.076 | 1.011 | 1.151 |
|
| 0.932 | 0.878 | 0.986 |
| Unclassified genus CAG-56 of | 1.095 | 1.024 | 1.175 |
| Unclassified genus UCG-010 of | 0.904 | 0.839 | 0.970 |
|
| 0.806 | 0.680 | 0.938 |
|
| 1.115 | 1.034 | 1.210 |
|
| 0.894 | 0.803 | 0.985 |
|
| 1.076 | 1.008 | 1.153 |
McFadden pseudo R
Functional gastrointestinal disorders vs. non-FGID logistic model: demographics + genomics + microbiome (D + G + M).
| Variable | OR | 2.5% CI | 97.5% CI |
| Gender | 2.256 | 1.151 | 4.638 |
| 1.186 | 1.030 | 1.388 | |
|
| 1.080 | 1.013 | 1.156 |
|
| 0.928 | 0.871 | 0.985 |
| Unclassified genus CAG-56 of | 1.100 | 1.028 | 1.184 |
| Unclassified genus UCG-010 of | 0.912 | 0.845 | 0.978 |
|
| 0.797 | 0.671 | 0.929 |
|
| 1.098 | 1.017 | 1.193 |
|
| 0.892 | 0.801 | 0.983 |
|
| 1.074 | 1.003 | 1.153 |
McFadden pseudo R
FIGURE 2Self-reported symptom severity change (number of levels increased/decreased severity) in functional gastrointestinal disorders from baseline to time of survey. Percentages displayed in red indicate the proportion of users who reported at least one point reduction is symptom severity.
Reduction in summative FGID symptom severity linear model: demographics + genomics + microbiome (D + G + M).
| Variable | Estimate | Std. error | ||
|
| 0.495 | 0.136 | 3.631 | < |
|
| −0.517 | 0.105 | −4.910 | < |
| Unclassified genus | 0.257 | 0.104 | 2.477 |
|
| Gluten Sensitivity (rs4639334), Risk Allele A | −2.013 | 0.792 | −2.541 |
|
| 0.646 | 0.246 | 2.626 |
| |
| Gluten Sensitivity (rs7775228), Risk Allele C | −1.936 | 0.828 | −2.338 |
|
|
| 0.505 | 0.218 | 2.322 |
|
|
| 0.319 | 0.116 | 2.756 |
|
| Candidatus | −0.461 | 0.150 | −3.076 |
|
| −0.290 | 0.134 | −2.157 |
|
Adjusted R
Reduction in IBS symptom severity linear model: demographics + genomics + microbiome (D + G + M).
| Variable | Estimate | Std. error | ||
| Gluten sensitivity (rs7775228), Risk Allele C | −0.566 | 0.225 | −2.515 |
|
| Unclassified genus | 0.092 | 0.024 | 3.844 | < |
|
| 0.087 | 0.028 | 3.122 |
|
|
| −0.096 | 0.038 | −2.501 |
|
|
| 0.101 | 0.034 | 3.007 |
|
|
| −0.079 | 0.028 | −2.775 |
|
Adjusted R
Reduction in constipation symptom severity linear model: demographics + genomics + microbiome (D + G + M).
| Variable | Estimate | Std. error | ||
|
| 0.231 | 0.073 | 3.174 |
|
| −0.161 | 0.051 | −3.125 |
| |
|
| 0.123 | 0.047 | 2.606 |
|
| Gluten sensitivity (rs7775228), Risk Allele C | 0.757 | 0.327 | 2.311 |
|
Adjusted R
Reduction in diarrhea symptom severity linear model: demographics + genomics + microbiome (D + G + M).
| Variable | Estimate | Std. error | ||
| 0.203 | 0.076 | 2.669 |
| |
| Lactobacillus | 0.114 | 0.042 | 2.706 |
|
| Unclassified genus UCG-009 of | −0.107 | 0.035 | −3.045 |
|
| Prevotella | 0.069 | 0.031 | 2.249 |
|
Adjusted R