ConNEcT: An R package to build contingency measure-based networks on binary time series.

Dynamic networks are valuable tools to depict and investigate the concurrent and temporal interdependencies of various variables across time. Although several software packages for computing and drawing dynamic networks have been developed, software that allows investigating the pairwise associations between a set of binary intensive longitudinal variables is still missing. To fill this gap, this paper introduces an R package that yields contingency measure-based networks (ConNEcT). ConNEcT implements different contingency measures: proportion of agreement, corrected and classic Jaccard index, phi correlation coefficient, Cohen's kappa, odds ratio, and log odds ratio. Moreover, users can easily add alternative measures, if needed. Importantly, ConNEcT also allows conducting non-parametric significance tests on the obtained contingency values that correct for the inherent serial dependence in the time series, through a permutation approach or model-based simulation. In this paper, we provide an overview of all available ConNEcT features and showcase their usage. Addressing a major question that users are likely to have, we also discuss similarities and differences of the included contingency measures.