Literature DB >> 35380917

m6A RNA modification in transcription regulation.

Junaid Akhtar1, Margot Lugoboni2, Guillaume Junion2.   

Abstract

RNA modifications are prevalent among all the classes of RNA, regulate diverse biological processes, and have emerged as a key regulatory mechanism in post-transcriptional control of gene expression. They are subjected to precise spatial and temporal control and shown to be critical for the maintenance of normal development and physiology. For example, m6A modification of mRNA affects stability, recruitment of RNA binding protein (RBP), translation, and splicing. The deposition of m6A on the RNA happens co-transcriptionally, allowing the tight coupling between the transcription and RNA modification machinery. The m6A modification is affected by transcriptional dynamics, but recent insights also suggest that m6A machinery impacts transcription and chromatin signature.

Entities:  

Keywords:  Epitranscriptome; Transcription; m6A

Mesh:

Substances:

Year:  2022        PMID: 35380917      PMCID: PMC9208771          DOI: 10.1080/21541264.2022.2057177

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  72 in total

1.  Structural Basis for the Discriminative Recognition of N6-Methyladenosine RNA by the Human YT521-B Homology Domain Family of Proteins.

Authors:  Chao Xu; Ke Liu; Hazem Ahmed; Peter Loppnau; Matthieu Schapira; Jinrong Min
Journal:  J Biol Chem       Date:  2015-08-28       Impact factor: 5.157

Review 2.  More than a splicing code: integrating the role of RNA, chromatin and non-coding RNA in alternative splicing regulation.

Authors:  Reini F Luco; Tom Misteli
Journal:  Curr Opin Genet Dev       Date:  2011-04-15       Impact factor: 5.578

3.  eRNAs are required for p53-dependent enhancer activity and gene transcription.

Authors:  Carlos A Melo; Jarno Drost; Patrick J Wijchers; Harmen van de Werken; Elzo de Wit; Joachim A F Oude Vrielink; Ran Elkon; Sónia A Melo; Nicolas Léveillé; Raghu Kalluri; Wouter de Laat; Reuven Agami
Journal:  Mol Cell       Date:  2012-12-27       Impact factor: 17.970

4.  Nuclear m(6)A Reader YTHDC1 Regulates mRNA Splicing.

Authors:  Wen Xiao; Samir Adhikari; Ujwal Dahal; Yu-Sheng Chen; Ya-Juan Hao; Bao-Fa Sun; Hui-Ying Sun; Ang Li; Xiao-Li Ping; Wei-Yi Lai; Xing Wang; Hai-Li Ma; Chun-Min Huang; Ying Yang; Niu Huang; Gui-Bin Jiang; Hai-Lin Wang; Qi Zhou; Xiu-Jie Wang; Yong-Liang Zhao; Yun-Gui Yang
Journal:  Mol Cell       Date:  2016-02-11       Impact factor: 17.970

5.  Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription.

Authors:  Minna U Kaikkonen; Nathanael J Spann; Sven Heinz; Casey E Romanoski; Karmel A Allison; Joshua D Stender; Hyun B Chun; David F Tough; Rab K Prinjha; Christopher Benner; Christopher K Glass
Journal:  Mol Cell       Date:  2013-08-08       Impact factor: 17.970

6.  N 6-methyladenosine of chromosome-associated regulatory RNA regulates chromatin state and transcription.

Authors:  Jun Liu; Xiaoyang Dou; Chuanyuan Chen; Chuan Chen; Chang Liu; Meng Michelle Xu; Siqi Zhao; Bin Shen; Yawei Gao; Dali Han; Chuan He
Journal:  Science       Date:  2020-01-16       Impact factor: 47.728

7.  Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.

Authors:  Bastian Linder; Anya V Grozhik; Anthony O Olarerin-George; Cem Meydan; Christopher E Mason; Samie R Jaffrey
Journal:  Nat Methods       Date:  2015-06-29       Impact factor: 28.547

8.  Transcription Impacts the Efficiency of mRNA Translation via Co-transcriptional N6-adenosine Methylation.

Authors:  Boris Slobodin; Ruiqi Han; Vittorio Calderone; Joachim A F Oude Vrielink; Fabricio Loayza-Puch; Ran Elkon; Reuven Agami
Journal:  Cell       Date:  2017-04-06       Impact factor: 41.582

9.  Zc3h13/Flacc is required for adenosine methylation by bridging the mRNA-binding factor Rbm15/Spenito to the m6A machinery component Wtap/Fl(2)d.

Authors:  Philip Knuckles; Tina Lence; Irmgard U Haussmann; Dominik Jacob; Nastasja Kreim; Sarah H Carl; Irene Masiello; Tina Hares; Rodrigo Villaseñor; Daniel Hess; Miguel A Andrade-Navarro; Marco Biggiogera; Mark Helm; Matthias Soller; Marc Bühler; Jean-Yves Roignant
Journal:  Genes Dev       Date:  2018-03-13       Impact factor: 11.361

10.  TonEBP recognizes R-loops and initiates m6A RNA methylation for R-loop resolution.

Authors:  Hyun Je Kang; Na Young Cheon; Hyun Park; Gyu Won Jeong; Byeong Jin Ye; Eun Jin Yoo; Jun Ho Lee; Jin-Hoe Hur; Eun-A Lee; Hongtae Kim; Kyoo-Young Lee; Soo Youn Choi; Whaseon Lee-Kwon; Kyungjae Myung; Ja Yil Lee; Hyug Moo Kwon
Journal:  Nucleic Acids Res       Date:  2021-01-11       Impact factor: 16.971

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  2 in total

Review 1.  Non-coding RNA in cancer drug resistance: Underlying mechanisms and clinical applications.

Authors:  Xuehao Zhou; Xiang Ao; Zhaojun Jia; Yiwen Li; Shouxiang Kuang; Chengcheng Du; Jinyu Zhang; Jianxun Wang; Ying Liu
Journal:  Front Oncol       Date:  2022-08-17       Impact factor: 5.738

Review 2.  The roles and mechanisms of epigenetic regulation in pathological myocardial remodeling.

Authors:  Kun Zhao; Yukang Mao; Yansong Li; Chuanxi Yang; Kai Wang; Jing Zhang
Journal:  Front Cardiovasc Med       Date:  2022-08-26
  2 in total

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