| Literature DB >> 35378931 |
Oscar E Juárez1, Lousiana Arreola-Meraz1, Edna Sánchez-Castrejón1, Omar Hernando Avila-Poveda2,3, Laura L López-Galindo4, Carlos Rosas5, Clara E Galindo-Sánchez1.
Abstract
Background: Elevated temperatures reduce fertilization and egg-laying rates in the octopus species. However, the molecular mechanisms that control the onset of fertilization and egg-laying in the octopus' oviducal gland are still unclear; and the effect of temperature on the expression of key reproductive genes is unknown. This study aims to better understand the molecular bases of octopus fertilization and egg-laying, and how they are affected by elevated temperatures. Method: RNA-seq of oviducal glands was performed for samples before, during, and after fertilization and their transcriptomic profiles were compared. Also, at the fertilization stage, the optimal and thermal-stress conditions were contrasted. Expression levels of key reproductive genes were validated via RT-qPCR.Entities:
Keywords: Egg-laying; Fertilization; Gamete recognition proteins; RNA-Seq; Thermal stress
Year: 2022 PMID: 35378931 PMCID: PMC8976471 DOI: 10.7717/peerj.12895
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Figure 1Schematic drawing of the acclimation, thermal experimental design, and oviducal gland dissection in O. maya.
MAT24 for mated females at 24 °C, FER24 for fertilization in females at 24 °C, SEN24 for senescent females at 24 °C and, FER-TD for fertilization in females from the high-temperature shock treatment with temperature decrease (HTST-TD).
Sequencing and reads assembly of cDNA libraries from oviducal glands of Octopus maya at different conditions.
| Libraries | Number of paired reads |
|---|---|
| MAT24 | 5,872,593 |
| FER24 | 4,931,726 |
| SEN24 | 5,507,769 |
| FER-TD | 5,352,396 |
| Average | 5,416,121 |
| Total | 21,664,484 |
| Passed QC filter | 19,969,819 |
| Transcriptome assembly | quantity |
| Contigs | 61,575 |
| Coding sequences | 36,136 |
| Contig length N50, nucleotides | 593 |
| Total assembled nucleotides | 32,348,437 |
Note:
MAT, mated; FER, fertilization; SEN, senescence; number 24 indicates 24 °C; TD, heat shock treatment with temperature decrease.
Figure 2Diagrams representing the number of upregulated transcripts in pairwise comparisons among (A) physiological stages; and (B) between thermal conditions of O. maya oviducal glands.
Functional enrichment of biological processes for the whole oviducal gland transcriptome of Octopus maya.
| GO | Term | FE | |
|---|---|---|---|
|
| cilium-dependent cell motility | 1.39E−04 | 5.51 |
|
| axoneme assembly | 7.24E−04 | 4.01 |
|
| telomere maintenance | 4.69E−04 | 3.08 |
|
| transcription from RNA polymerase III promoter | 6.50E−04 | 2.99 |
|
| intracellular transport of virus | 5.96E−04 | 2.53 |
|
| RNA processing | 4.18E−06 | 2.42 |
|
| activation of GTPase activity | 1.50E−04 | 2.30 |
|
| transcription-coupled nucleotide-excision repair | 4.20E−04 | 2.25 |
|
| protein sumoylation | 2.09E−04 | 2.01 |
|
| cilium morphogenesis | 5.97E−05 | 2.01 |
Note:
GO, gene ontology; FE, fold enrichment.
Functional enrichment for differentially expressed genes in oviducal glands of Octopus maya at each condition.
| GO term | FE | |
|---|---|---|
| MAT24 | ||
| fat-soluble vitamin metabolic process | 30.28 | 3.83E−03 |
| IMP biosynthetic process | 20.18 | 8.90E−03 |
| negative regulation of RNA splicing | 13.76 | 4.01E−04 |
| cellular biogenic amine metabolic process | 12.75 | 3.44E−03 |
| cellular amine metabolic process | 9.18 | 1.95E−03 |
| regulation of mRNA splicing, | 6.49 | 2.15E−03 |
| extracellular structure organization | 4.07 | 3.32E−03 |
| alpha-amino acid metabolic process | 3.41 | 4.68E−03 |
| nucleotide biosynthetic process | 3.32 | 1.00E−02 |
| DNA replication | 3.06 | 8.77E−03 |
| FER24 | ||
| positive regulation of calcineurin-NFAT signaling cascade | 31.33 | 2.96E−03 |
| regulation of male germ cell proliferation | 18.80 | 9.45E−03 |
| positive regulation of cholesterol efflux | 18.80 | 9.45E−03 |
| cell volume homeostasis | 13.05 | 4.04E−04 |
| water homeostasis | 12.53 | 3.23E−03 |
| hydrogen peroxide catabolic process | 11.39 | 4.34E−03 |
| phagocytosis, engulfment | 9.64 | 7.17E−03 |
| protein hydroxylation | 9.64 | 7.17E−03 |
| serine family amino acid biosynthetic process | 8.95 | 8.92E−03 |
| retinoid metabolic process | 7.23 | 1.19E−03 |
| muscle organ morphogenesis | 6.53 | 6.42E−03 |
| cellular hormone metabolic process | 4.95 | 6.65E−03 |
| positive regulation of cell-substrate adhesion | 4.70 | 8.28E−03 |
| regulation of reproductive process | 4.14 | 6.40E−03 |
| cellular amino acid catabolic process | 3.86 | 2.11E−03 |
| extracellular structure organization | 3.69 | 9.70E−05 |
| extracellular matrix organization | 3.30 | 9.64E−04 |
| reactive oxygen species metabolic process | 3.03 | 9.28E−03 |
| glycosylation | 2.83 | 7.98E−04 |
| glycoprotein metabolic process | 2.42 | 1.70E−03 |
| SEN24 | ||
| regulation of microvillus organization | 58.80 | 8.40E−04 |
| cellular hormone metabolic process | 9.28 | 4.09E−04 |
| retinoid metabolic process | 9.05 | 9.22E−03 |
| iron ion homeostasis | 8.91 | 2.18E−03 |
| transition metal ion transport | 7.06 | 1.47E−03 |
| hormone metabolic process | 5.35 | 1.84E−03 |
| cellular response to growth factor stimulus | 3.27 | 3.18E−04 |
| lipid metabolic process | 1.99 | 3.69E−03 |
| FER24 | ||
| extracellular matrix disassembly | 26.13 | 7.08E−02 |
| plasma membrane organization | 7.56 | 5.45E−02 |
| regulation of cell adhesion | 5.75 | 8.79E−02 |
| single-organism membrane organization | 3.45 | 9.63E−02 |
| signaling | 1.72 | 7.87E−02 |
Note:
GO, gene ontology; FE, fold enrichment; MAT24, mated; FER24, fertilized; SEN24, senescence; all at 24 °C. FER-TD, fertilized and exposed to the heat shock treatment with temperature decrease.
Transcripts corresponding to the glycoprotein biosynthesis process upregulated in the FER24 condition.
| Transcript ID | UniProt ID | Gene name | Protein name |
|---|---|---|---|
| TRINITY_DN43413_c0_g1_i1 | ALG8_HUMAN | ALG8 | Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase |
| TRINITY_DN13830_c0_g1_i5 | B3GN5_PIG | B3GNT5 | Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase |
| TRINITY_DN13397_c0_g2_i3 | BRE4_CAEBR | bre-4 | Beta-1,4-N-acetylgalactosaminyltransferase bre-4 |
| TRINITY_DN5237_c0_g1_i1 | CANT1_HUMAN | CANT1 | Soluble calcium-activated nucleotidase 1 |
| TRINITY_DN16173_c0_g2_i10 | D19L1_HUMAN | DPY19L1 | Probable C-mannosyltransferase DPY19L1 |
| TRINITY_DN16072_c0_g1_i2 | EDEM2_HUMAN | EDEM2 | ER degradation-enhancing alpha-mannosidase-like protein 2 |
| TRINITY_DN16442_c0_g2_i1 | FUCTA_DROME | FucTA | Glycoprotein 3-alpha-L-fucosyltransferase A |
| TRINITY_DN14002_c0_g1_i1 | G3ST2_MOUSE | Gal3st2 | Galactose-3-O-sulfotransferase 2 |
| TRINITY_DN11335_c0_g1_i1 | GALT9_CAEEL | gly-9 | Probable N-acetylgalactosaminyltransferase 9 |
| TRINITY_DN3280_c0_g1_i1 | GCNT1_MOUSE | Gcnt1 | Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase |
| TRINITY_DN10779_c0_g1_i1 | GOGA2_RAT | Golga2 | Golgin subfamily A member 2 |
| TRINITY_DN16242_c0_g1_i8 | LRP2_HUMAN | LRP2 | Low-density lipoprotein receptor-related protein 2 |
| TRINITY_DN29933_c0_g1_i1 | MGT4B_DANRE | mgat4b | Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B |
| TRINITY_DN11201_c0_g1_i1 | PMGT1_HUMAN | POMGNT1 | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 |
| TRINITY_DN10762_c0_g1_i1 | STT3A_BOVIN | STT3A | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A |
| TRINITY_DN7997_c0_g1_i1 | TMM59_MOUSE | Tmem59 | Transmembrane protein 59 |
Note:
These transcripts were upregulated in oviducal glands of fertilized Octopus maya females in the Control condition (24 °C).
Figure 3Heatmap of top DEGs among the physiological stages of oviducal glands of O. maya.
Row labels indicate the UniProt IDs of the best BLASTx hit for each transcript. MAT24 for mated females at 24 °C, FER24 for fertilization in females at 24 °C, SEN24 for senescent females at 24 °C and, FERTD for fertilization in females from the HTST-TD. Values in log2(TPM+1).
Figure 4Heatmap of top DEGs from the comparison between O. maya oviducal gland samples of the Control condition against samples of the HTST-TD.
Row labels indicate the UniProt IDs of the best BLASTx hit for each transcript. MAT24 for mated females at 24 °C, FER24 for fertilization in females at 24 °C, SEN24 for senescent females at 24 °C and, FERTD for fertilization in females from the HTST-TD. Values in log2(TPM+1).
Figure 5Expression heatmap for regulatory genes of oviducal glands’ activity in O. maya at different conditions.
Row labels indicate the UniProt IDs of the best BLASTx hit for each transcript. MAT24 for mated females at 24 °C, FER24 for fertilization in females at 24 °C, SEN24 for senescent females at 24 °C and, FERTD for fertilization in females from the HTST-TD. Values in log2(TPM+1), ***DEGs (fold change > 2, false discovery rate < 0.05).
Primers for target and reference genes of Octopus maya oviducal glands used in RT-qPCR.
| Transcript | Protein name | E | Tm | Size | Primers |
|---|---|---|---|---|---|
| TRINITY_DN22438_c0_g1_i1 | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 | 109.8 | 60 | 119 | CGGAAACCTAACGAAACAGG |
| GACCAGCATGCAATAGCAAA | |||||
| TRINITY_DN16362_c4_g6_i1 | Chorion peroxidase | 97.3 | 60 | 116 | CGGCTTATCACGACGGTTAT |
| GCATTTTGCGTTGAAAGGTT | |||||
| TRINITY_DN14910_c0_g1_i2 | Diamine acetyltransferase 2 | 90.5 | 60 | 127 | ACCCACCTTCTGTTGATGATCT |
| ACCAATGGTCCTGTGCTTAGT | |||||
| TRINITY_DN12903_c1_g1_i1 | Dopamine receptor 1 | 91.4 | 60 | 120 | GGCTGTGACCTCGACATCAA |
| GTGTTGCTGAGCCGTACTGT | |||||
| TRINITY_DN12984_c0_g1_i1 | Matrix metalloproteinase-19 | 94 | 60 | 150 | TGACGAAGAATGGACTGCAA |
| TGGAAATCCTTCACGAAACC | |||||
| TRINITY_DN32740_c0_g1_i1 | Myomodulin neuropeptides 1 | 97.2 | 62 | 118 | GCAGTGGACCATTCCTTGAT |
| TTTTCGAAGCCATTTTGTCC | |||||
| TRINITY_DN16150_c1_g1_i4 | Peroxiredoxin-4 | 100.9 | 60 | 107 | ATGGCCAAGATTCTGAAGGA |
| CACCACGAAACAAAGGAGGT | |||||
| TRINITY_DN15757_c0_g1_i2 | Protein catecholamines up | 98.4 | 60 | 114 | TTGGGTCTGCGAGTCTTCTT |
| AGCCATTCTCACAGCGAAGT | |||||
| Reference ( | 60S ribosomal protein L6 | 92.1 | 60 | 171 | GGAAGGCACAAGGGAAAGCG |
| CCTGGCTGGGATCTGAACCT | |||||
| Reference ( | Elongation factor 1B | 95.3 | 60 | 108 | TGATGTCAAACCATGGGACG |
| AGAGGTGCTAACTTGGACGC |
Note:
E, primer efficiency; Tm, annealing temperature; Size, product size in base pairs.
Figure 6Relative expression of target genes (RT-qPCR, average and standard deviation) at different conditions of oviducal glands of O. maya.
Comparison between the Control temperature (24 °C) and HTST-TD. MAT, mated; FER, fertilization; SEN, senescence. Relative expression (fold change, FC) was calculated using the 60S ribosomal protein L6 and Elongation factor 1 B as reference genes (values in Log10 scale). The expected gene expression patterns (A, B, and C) were estimated in the Control condition by bioinformatic methods.