| Literature DB >> 35371588 |
Su-Jeong Ha1, Yeo-Ok Choi2, Eun-Bin Kwag1, Soo-Dam Kim1, Hwa-Seung Yoo3, In-Cheol Kang4,5, So-Jung Park1.
Abstract
Objectives: Snake venom is a complex mixture of various pharmacologically active substances, such as small proteins, peptides, and organic and mineral components. This paper aims to identify and analyse the proteins in common venomous snakes, such as Gloydius blomhoffii (G. blomhoffii) and Agkistrodon acutus (A. acutus), in Korea.Entities:
Keywords: agkistrodon acutus; gloydius blomhoffii; proteomics; venom proteome; venomics
Year: 2022 PMID: 35371588 PMCID: PMC8947974 DOI: 10.3831/KPI.2022.25.1.52
Source DB: PubMed Journal: J Pharmacopuncture ISSN: 2093-6966
Figure 1UPLC/Q-TOF MS chromatogram of G. blomhoffii venom.
Peaks that were identified for G. blomhoffii venom by using Q-TOF MS
| No. | Name | Type | RT (min) | m/z | Mass (kDa) |
|---|---|---|---|---|---|
| 1 | Salmosa venom 423 | Analyte | 3.07 | 1,064.1456 | 7.442 |
| 2 | Salmosa venom 463 | Analyte | 3.34 | 1,079.8689 | 7.552 |
| 3 | Salmosa venom 602 | Analyte | 4.31 | 1,159.3231 | 15.071 |
| 4 | Salmosa venom 864 | Analyte | 6.22 | 242.2824 | 1.676 |
| 5 | Salmosa venom 1000 | Analyte | 7.20 | 1,081.6899 | 6.189 |
Figure 2UPLC/Q-TOF MS chromatogram for A. acutus venom.
Peaks that were identified for A. acutus venom by using Q-TOF MS
| No. | Name | Type | RT (min) | m/z | Mass (kDa) |
|---|---|---|---|---|---|
| 1 | Obosa venom 838 | Analyte | 6.04 | 1,038.7026 | 22.829 |
| 2 | Obosa venom 925 | Analyte | 6.62 | 1,099.4354 | 22.964 |
| 3 | Obosa venom 969 | Analyte | 6.98 | 1,149.1576 | 22.963 |
Figure 3(A) Staining with Coomassie blue gel: Electrophoretic profiles of G. blomhoffii and A. acutus venoms are presented in a 4%-12% gradient SDS-PAGE gel. Picture showing individual venoms prepared and run in various concentrations. Proteins were visualised using a staining solution of 50% MeOH, 10% acetic acid and 1% Coomassie blue. (B) Ponceau S membrane staining: gels with the proteins were transferred to polyvinylidene difluoride (PVDF) membranes and visualised using Ponceau S solution.
Amino acids identified from G. blomhoffii venom using N-terminal sequencing
| No. | Amino acid |
|---|---|
| 1 | The result is uncertain |
| 2 | Pro |
| 3 | Ala |
| 4 | Gln |
| 5 | The result is uncertain |
| 6 | Not detected |
| 7 | Thr |
| 8 | Ile |
| 9 | Not detected |
| 10 | Leu |
The standard three letter code was used for the amino acid residues.
Amino acids identified from A. acutus venom by using N-terminal sequencing
| No. | Amino acid |
|---|---|
| 1 | The result is uncertain |
| 2 | Pro |
| 3 | Glu, Gly, Tyr |
| 4 | Phe |
| 5 | Gln |
| 6 | Not detected |
| 7 | Tyr |
| 8 | Met |
| 9 | Not detected |
| 10 | Ile |
The standard three letter code was used for the amino acid residues.
N-terminal sequencing of the venom from the A. acutus snake
| No. | Protein name | Sequence | Uniprot |
|---|---|---|---|
| 0 | A.acutus sample-1 | P E F Q _Y M | P60244 |
| 1 | Chain A, ACUTOLYSIN A FROM SNAKE VENOM OF | _ _ F Q R Y M | |
| 2 | Chain A, ACUTOLYSIN A FROM SNAKE VENOM OF | _ _ F Q R Y M | |
| 0 | A.acutus sample-2 | P G F Q _Y M | P60244 |
| 1 | Chain A, ACUTOLYSIN A FROM SNAKE VENOM OF | _ _ F Q R Y M | |
| 2 | Chain A, ACUTOLYSIN A FROM SNAKE VENOM OF | _ _ F Q R Y M | |
| 0 | A.acutus sample-3 | P Y F Q _ Y M | P60244 |
| 1 | Chain A, ACUTOLYSIN A FROM SNAKE VENOM OF | _ _ F Q R Y M | |
| 2 | Chain A, ACUTOLYSIN A FROM SNAKE VENOM OF | _ _ F Q R Y M |
Figure 4In-gel digestion of different protein bands with molecular weights less than 20 kDa on 1D-gel in (A) G. blomhoffii and (B) A. acutus venoms for protein identification. After SDS-PAGE using 4%-12% gradient gel, the gel slices were subjected to digestion using the in-gel digestion protocol (described in Materials and Methods).
Proteins in G. blomhoffii (S1-S5) and A. acutus (O1-O6) venoms detected from in-solution digests by using UPLC-HDMSE
| Band | Accession | Description | Protein | Score | Avg mass | Matched | Matched | Digest | SeqCover |
|---|---|---|---|---|---|---|---|---|---|
| S1 | P14418 | Phospholipase A2_ acidic (EC 3.1.1.4) | PLA2 | 518.431 | 13,973.892 | 20 | 3 | 2,205 | 22.58 |
| P22796 | Hemorrhagic factor II (EC 3.4.24.-) | SVMP | 767.0865 | 22,595.849 | 38 | 5 | 3,801 | 21 | |
| P79845 | Cysteine-rich venom protein precursor | CRiSP | 1,053.453 | 20,377.963 | 30 | 2 | 3,444 | 14.21 | |
| P34179 | Adamalysin II (EC 3.4.24.46) | SVMP | 201.4728 | 23,075.626 | 13 | 1 | 3,864 | 4.93 | |
| S2 | P22796 | Hemorrhagic factor II (EC 3.4.24.-) | SVMP | 1,678.013 | 22,595.849 | 62 | 8 | 3,801 | 34 |
| P79845 | Cysteine-rich venom protein precursor | CRiSP | 1,051.569 | 20,377.963 | 20 | 4 | 3,444 | 27.87 | |
| P14418 | Phospholipase A2_ acidic (EC 3.1.1.4) | PLA2 | 2,028.666 | 13,973.892 | 42 | 4 | 2,205 | 20.97 | |
| S3 | P04417 | Phospholipase A2_ basic (EC 3.1.1.4) (PA2-I) | PLA2 | 2,161.394 | 13,982.312 | 28 | 3 | 2,163 | 15.57 |
| P00623 | Phospholipase A2 alpha (EC 3.1.1.4) | PLA2 | 2,064.735 | 13,679.499 | 37 | 4 | 2,163 | 37.7 | |
| P14421 | Phospholipase A2_ neutral (EC 3.1.1.4) | PLA2 | 4,071.618 | 13,868.646 | 32 | 5 | 2,163 | 36.89 | |
| P00624 | Phospholipase A2 (EC 3.1.1.4) | PLA2 | 1,582.225 | 13,595.372 | 25 | 3 | 2,163 | 34.43 | |
| P14418 | Phospholipase A2_ acidic (EC 3.1.1.4) | PLA2 | 2,517.537 | 13,973.892 | 54 | 5 | 2,205 | 20.97 | |
| P79845 | Cysteine-rich venom protein precursor | CRiSP | 437.537 | 20,377.963 | 11 | 1 | 3,444 | 7.1 | |
| S4 | P04417 | Phospholipase A2_ basic (EC 3.1.1.4) (PA2-I) | PLA2 | 1,915.819 | 13,982.312 | 32 | 3 | 2,163 | 21.31 |
| P00623 | Phospholipase A2 alpha (EC 3.1.1.4) | PLA2 | 2,064.735 | 13,679.499 | 37 | 4 | 2,163 | 37.7 | |
| P14421 | Phospholipase A2_ neutral (EC 3.1.1.4) | PLA2 | 4,071.618 | 13,868.646 | 32 | 5 | 2,163 | 36.89 | |
| P00624 | Phospholipase A2 (EC 3.1.1.4) | PLA2 | 1,582.225 | 13,595.372 | 25 | 3 | 2,163 | 34.43 | |
| P14418 | Phospholipase A2_ acidic (EC 3.1.1.4) | PLA2 | 3,290.186 | 13,973.892 | 63 | 5 | 2,205 | 33.87 | |
| S5 | P00623 | Phospholipase A2 alpha (EC 3.1.1.4) | PLA2 | 747.4556 | 13,679.499 | 12 | 2 | 2,163 | 26.23 |
| P00624 | Phospholipase A2 (EC 3.1.1.4) | PLA2 | 478.1932 | 13,595.372 | 25 | 4 | 2,163 | 18.85 | |
| P14418 | Phospholipase A2_ acidic (EC 3.1.1.4) | PLA2 | 731.7947 | 13,973.892 | 18 | 1 | 2,205 | 8.87 | |
| O1 | Q9PW35 | Acutolysin A precursor (EC 3.4.24.-) | SVMP | 672.6088 | 46,564.95 | 35 | 4 | 8,274 | 9.44 |
| O2 | Q9PW35 | Acutolysin A precursor (EC 3.4.24.-) | SVMP | 5,820.132 | 46,564.95 | 259 | 22 | 8,274 | 26.15 |
| O3 | Q9PW35 | Acutolysin A precursor (EC 3.4.24.-) | SVMP | 515.6565 | 46,564.95 | 49 | 6 | 8,274 | 15.74 |
| P14418 | Phospholipase A2_ acidic (EC 3.1.1.4) | PLA2 | 533.1411 | 13,973.892 | 15 | 2 | 2,205 | 8.87 | |
| P79845 | Cysteine-rich venom protein precursor | CRiSP | 641.5217 | 20,377.963 | 16 | 2 | 3,444 | 7.1 | |
| O4 | P14418 | Phospholipase A2_ acidic (EC 3.1.1.4) | PLA2 | 735.4298 | 13,973.892 | 19 | 2 | 2,205 | 8.87 |
| O5 | P81114 | Alboaggregin A subunit 4. | CTL/snaclec | 1,126.348 | 14,543.723 | 24 | 2 | 6 | 26.02 |
| Q9PW35 | Acutolysin A precursor (EC 3.4.24.-) | SVMP | 1,579.929 | 47,192.186 | 57 | 6 | 35 | 19.85 | |
| P14418 | Phospholipase A2_ acidic (EC 3.1.1.4) | PLA2 | 1,291.795 | 14,772.193 | 30 | 2 | 14 | 17.74 | |
| O6 | Q9PW35 | Acutolysin A precursor (EC 3.4.24.-) | SVMP | 1,962.108 | 47,192.186 | 110 | 8 | 35 | 23.97 |
Abbreviations: CTL, C-type lectin; CRiSP, cysteine-rich secretory protein; PLA2, phospholipase A2; SVMP, snake venom metalloproteinase.