| Literature DB >> 35371008 |
Zongchao Yu1, Xiaoping Hong2, Xiaoli Zhang3, Fengping Zheng2, Fanna Liu1, Huixuan Xu2, Chengxin Zhu2, Wanxia Cai2, Dongzhou Liu1, Lianghong Yin1, Bo Hu1, Donge Tang2, Yong Dai2.
Abstract
Background: Ankylosing spondylitis (AS) is a chronic inflammatory disease with serious consequences and a high rate of morbidity and mortality, In our previous work, we reveal the key features of proteins in new-onset ankylosing spondylitis patients. Material andEntities:
Keywords: ankylosing spondylitis (AS); global proteomic; immune regulation; peripheral blood mononuclear cells (PBMC); phosphorylation
Mesh:
Year: 2022 PMID: 35371008 PMCID: PMC8967996 DOI: 10.3389/fimmu.2022.838891
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 7.561
Figure 1Protein identification. (A, B) DEPs and DPPs between AS patients and healthy controls. DEPs, differentially expressed proteins; DPPs, differentially Phosphorylated proteins.
Figure 2Enrichment analysis of phosphorylated protein motifs (A). Heatmap of the amino acid compositions of the phosphorylation sites showing the frequency of the different types of amino acids around serine (B) and threonine (C). Red indicates significant enrichment of the amino acid near the modification site, and green indicates significant reduction of the amino acid near the modification site.
Figure 3COG functional classification distribution map of DEPs (A) and DPPs (B).
Figure 4GO-based enrichment analysis of DEPs (A) and DPPs (B) in terms of cellular component, molecular function and biological process.
Figure 5KEGG pathway-based enrichment analysis of DEPs (A) and DPPs (B).
Figure 6Protein domain enrichment analysis of DEPs (A) and DPPs (B).
Figure 7Protein–protein interaction (PPI) network analysis of DEPs (A) and DPPs (B). The STRING database was used to annotate the functional interactions of all the identified DEPs and DPPs.
Verification results of target proteins.
| KEGG pathway | Protein Accession | Gene | Protein description | AS Relative Abundence | HC Relative Abundence | Fold change (AS/HC Ratio) in PRM | Fold change (AS/HC Ratio) in LQ |
|---|---|---|---|---|---|---|---|
| hsa04612 Antigen processing and presentation | P08238 | HSP90AB1 | Heat shock protein HSP 90-beta | 1.94 | 0.06 | 32.89 | 12.33 |
| P07900 | HSP90AA1 | Heat shock protein HSP 90-alpha | 1.95 | 0.05 | 35.40 | 4.99 | |
| P11142 | HSPA8 | Heat shock cognate 71 kDa protein | 1.57 | 0.43 | 3.63 | 1.93 | |
| hsa04611 Platelet activation | Q14643 | ITPR1 | Inositol 1,4,5-trisphosphate receptor type 1 | 1.77 | 0.23 | 7.70 | 9.47 |
| Q15746 | MYLK | Myosin light chain kinase, smooth muscle | 1.91 | 0.09 | 21.84 | 8.35 | |
| Q13586 | STIM1 | Stromal interaction molecule 1 | 1.91 | 0.09 | 22.35 | 6.07 | |
| P07948 | LYN | Tyrosine-protein kinase Lyn | 1.80 | 0.20 | 8.79 | 3.20 | |
| Q16539 | MAPK14 | Mitogen-activated protein kinase 14 | 1.20 | 0.80 | 1.50 | 2.68 | |
| P12931 | SRC | Proto-oncogene tyrosine-protein kinase Src | 1.84 | 0.16 | 11.59 | 1.59 | |
| hsa04670 Leukocyte transendothelial migration | P19105 | MYL12A | Myosin regulatory light chain 12A | 1.79 | 0.21 | 8.72 | 17.35 |
| P24844 | MYL9 | Myosin regulatory light polypeptide 9 | 1.81 | 0.19 | 9.66 | 8.48 | |
| O75116 | ROCK2 | Rho-associated protein kinase 2 | 1.90 | 0.10 | 18.75 | 6.12 | |
| O43707 | ACTN4 | Alpha-actinin-4 | 1.64 | 0.36 | 4.62 | 5.23 | |
| P14780 | MMP9 | Matrix metalloproteinase-9 | 1.90 | 0.10 | 18.97 | 4.41 | |
| P05771 | PRKCB | Protein kinase C beta type | 1.72 | 0.28 | 6.05 | 3.48 | |
| P18206 | VCL | Vinculin | 1.66 | 0.34 | 4.85 | 3.28 | |
| P12814 | ACTN1 | Alpha-actinin-1 | 1.78 | 0.22 | 7.98 | 2.82 | |
| P16284 | PECAM1 | Platelet endothelial cell adhesion molecule | 1.79 | 0.21 | 8.48 | 1.88 | |
| P11215 | ITGAM | Integrin alpha-M | 1.28 | 0.72 | 1.78 | 1.85 |