| Literature DB >> 35370765 |
Jacky Lo1, Anna-Lena Forst2, Richard Warth2, Anselm A Zdebik1,3.
Abstract
In 2009, two groups independently linked human mutations in the inwardly rectifying K+ channel Kir4.1 (gene name KCNJ10) to a syndrome affecting the central nervous system (CNS), hearing, and renal tubular salt reabsorption. The autosomal recessive syndrome has been named EAST (epilepsy, ataxia, sensorineural deafness, and renal tubulopathy) or SeSAME syndrome (seizures, sensorineural deafness, ataxia, intellectual disability, and electrolyte imbalance), accordingly. Renal dysfunction in EAST/SeSAME patients results in loss of Na+, K+, and Mg2+ with urine, activation of the renin-angiotensin-aldosterone system, and hypokalemic metabolic alkalosis. Kir4.1 is highly expressed in affected organs: the CNS, inner ear, and kidney. In the kidney, it mostly forms heteromeric channels with Kir5.1 (KCNJ16). Biallelic loss-of-function mutations of Kir5.1 can also have disease significance, but the clinical symptoms differ substantially from those of EAST/SeSAME syndrome: although sensorineural hearing loss and hypokalemia are replicated, there is no alkalosis, but rather acidosis of variable severity; in contrast to EAST/SeSAME syndrome, the CNS is unaffected. This review provides a framework for understanding some of these differences and will guide the reader through the growing literature on Kir4.1 and Kir5.1, discussing the complex disease mechanisms and the variable expression of disease symptoms from a molecular and systems physiology perspective. Knowledge of the pathophysiology of these diseases and their multifaceted clinical spectrum is an important prerequisite for making the correct diagnosis and forms the basis for personalized therapies.Entities:
Keywords: EAST syndrome, SeSAME syndrome; KCNJ10; KCNJ16; channelopathy; deafness; distal convoluted tubule; epilepsy
Year: 2022 PMID: 35370765 PMCID: PMC8965613 DOI: 10.3389/fphys.2022.852674
Source DB: PubMed Journal: Front Physiol ISSN: 1664-042X Impact factor: 4.566
Figure 1Structural model of the Kir4.1/Kir5.1 heteromer (rendered with PyMol 2.5.2) of a Kir4.1/Kir5.1 model generated with AlphaFold Multimer (Jumper et al., 2021, Evans and O’Neill, https://www.biorxiv.org/content/10.1101/2021.10.04.463034v1). We truncated both N- and C-termini slightly, to reduce complexity. AlphaFold yielded three models with almost identical ranking, but only one of them conformed to the alternating subunit structure postulated by Lagrutta et al. (1996). Kir4.1 subunits are brown, and Kir5.1 subunits are green.
Figure 2(A) Expression of KCNJ10 (Kir4.1), KCNJ16 (Kir5.1), and KCNJ15 (Kir4.2) in human tissues. Data were obtained from “The Human Protein Atlas” (https://www.proteinatlas.org/ENSG00000177807-KCNJ10/summary/rna; https://www.proteinatlas.org/ENSG00000153822-KCNJ16/summary/rna; https://www.proteinatlas.org/ENSG00000157551-KCNJ15/summary/rna). Data are presented as “consensus dataset” consisting of normalized expression (nTPM) levels, created by combining the HPA and GTEx transcriptomics datasets using the internal normalization pipeline of “The Human Protein Atlas” (https://www.proteinatlas.org). Please note that the number of samples for each tissue and the origin of the different tissues is different. Therefore, it can be difficult to quantitatively compare expression in different tissues. (B) Expression of KCNJ10, KCNJ16, and KCNJ15 along the human nephron. Data are taken from (Chabardes-Garonne et al., 2003). In this beautiful study, fresh human kidney tissue from nine donors was microdissected into glomeruli (glom), proximal convoluted tubules (PCT), proximal straight tubules (PST), medullary thick ascending limbs (MTAL), cortical thick ascending limbs (CTAL), distal convoluted tubules (DCT), cortical collecting ducts (CCD), and outer medullary collecting ducts (OMCD). Gene expression was assessed by “serial analysis of gene expression” (SAGE). (C) Expression of KCNJ10, KCNJ16, and KCNJ15 along the mouse tubular system. Data are taken from https://esbl.nhlbi.nih.gov/MRECA/Nephron/ (Chen et al., 2021). In this beautiful study, RNA-seq was performed on murine microdissected tubular segments. Initial segment of the proximal tubule (PTS1); proximal straight tubule in cortical medullary rays (PTS2); last segment of the proximal straight tubule in the outer stripe of outer medulla (PTS3); short descending limb of the loop of Henle (DTL1); long descending limb of the loop of Henle in the outer medulla (DTL2); long descending limb of the loop of Henle in the inner medulla (DTL3); thin ascending limb of the loop of Henle (ATL); medullary thick ascending limb of the loop of Henle (MTAL); cortical thick ascending limb of the loop of Henle (CTAL); macula densa (MD); distal convoluted tubule (DCT); connecting tubule (CNT); cortical collecting duct (CCD); outer medullary collecting duct (OMCD); inner medullary collecting duct (IMCD). Another excellent source of transcriptome data is https://cello.shinyapps.io/kidneycellexplorer/, which provides single cell RNA-seq data of mouse kidney (Ransick et al., 2019). These single cell-based data indicate that Kir4.1 and Kir5.1 are strongly expressed in principal cells of connecting tubules and collecting ducts, but not in intercalated cells (data not shown).
Mutations identified in KCNJ10/Kir4.1.
| Mutation | CADD score | Associated phenotypes | Typical/Atypical/ASD | Function (expressed alone) | Reference | ||||
|---|---|---|---|---|---|---|---|---|---|
| E | A | S | T | WM | |||||
| R18Q | 22.4 | Y | Y | N | N | N | ASD | Gain of function | |
| T57I | 25.8 | Y | Y | Y | Y | N | T | Complete LOF |
|
| I60T | 24.9 | Y | Y | ND | N | Y | A | Not determined |
|
| I60M | 22.5 | N | Y | Y | N | N | A | Not determined |
|
| R65C | 29.1 | Y | Y | Y | Y | N | T | Not determined |
|
| R65C | 29.1 | Y | Y | Y | Y | Y | T | Not determined |
|
| R65C | 29.1 | Y | Y | Y | Y | ND | T | 82% reduction in currents |
|
| R65P | 28.5 | Y | ND | ND | ND | ND | T | Not determined |
|
| R65P | 28.5 | Y | Y | Y | Y | N | T | 75% reduction in currents | |
| R65P | 28.5 | Y | Y | Y | Y | ND | T | >80% reduction in currents | |
| L68P | 26.0 | Y | Y | ? | ? | ? | ? | Not determined |
|
| F75C | 27.7 | Y | Y | Y | Y | ND | T | Complete loss of function |
|
| F75L | 23.6 | Y | Y | Y | Y | ND | T | >90% reduction in currents |
|
| G77R | 25.2 | Y | Y | Y | Y | ND | T | >90% reduction in currents |
|
| G83V | 26.4 | ? | ? | ? | ? | ? | ? | Complete loss of function |
|
| V84M | 24.9 | Y | N | N | N | N | ASD | Gain of function |
|
| V91Gfs*197 | Y | Y | Y | Y | ND | T | Complete loss of function |
| |
| F119Gfs*25 | Y | Y | Y | Y | N | T | Not determined |
| |
| I129V | 24.6 | Y | Y | ? | ? | ? | ? | Not determined |
|
| C140R | 26.7 | Y | Y | Y | Y | ND | T | Complete loss of function | |
| G163D (1) | 26.8 | N | Y | Y | N | N | A | Complete loss of function |
|
| T164I | 23.6 | Y | Y | Y | Y | Y | T | Complete loss of function | |
| L166Q | 27.2 | ? | ? | ? | ? | ? | ? | 50% reduction in currents |
|
| A167V | 25.8 | N | N | N | Y | ND | A | 40% reduction in currents | |
| A167V (6) | 25.8 | Y | Y | Y | Y | ND | T | ~50% with R297C | |
| R171Q (1) | 28.1 | N | Y | Y | N | N | A | 50% reduction in currents |
|
| R175Q | 29.8 | Y | Y | Y | Y | ND | T | >90% reduction in currents |
|
| P194H (2) | 23.7 | N | N | Y | N | ND | A | 51% reduction in currents |
|
| R199* | Y | Y | Y | Y | ND | ? | Complete loss of function | ||
| A201T (3) | 27.4 | Y | Y | N | N | N | A | Almost complete loss of function |
|
| R204H | 29.2 | Y | Y | Y | Y | N | T | Not determined |
|
| I209T (3) | 25.9 | Y | Y | N | N | N | A | 37% reduction in currents |
|
| Q212R | 26.0 | ? | ? | ? | ? | ? | ? | Currents similar to WT |
|
| L218F (4) | 27.3 | Y | Y | N | N | N | A | 60% reduction in currents |
|
| N232Qfs*14 | Y | Y | Y | Y | Y | T | Not determined | ||
| V259* | Y | Y | Y | Y | ND | T | Complete loss of function |
| |
| G275Vfs*7 | Y | Y | N | Y | Y | A | Predicted to be deleterious | ||
| T290A | 25.8 | Y | Y | Y | N | N | A | 60% reduced currents (LCL) |
|
| R297C | 32 | Y | Y | Y | Y | ND | T | >90% reduction in currents | |
| R297C | 32 | Y | Y | Y | Y | ND | T | Complete loss of function | |
| R348C (2) | 22.7 | N | N | Y | N | ND | ? | 44% reduction in currents |
|
| R348H | 16.5 | Y | N | N | N | ND | ASD | Gain of function |
|
| >25% Residual function | |||||||||
| <25% Residual function | |||||||||
| Atypical features | |||||||||
| Gain of function | |||||||||
| Function unknown | |||||||||
Table 1 summarizes the consequences of KCNJ10 mutations. CADD score according to https://cadd.gs.washington.edu/snv (Rentzsch et al., 2019). Associated phenotypes refer to epilepsy (E), ataxia (A), sensorineural deafness (S), tubulopathy, hypokalemia and alkalosis (T), white matter abnormalities (WM), and autism spectrum disorder (ASD). Yes (Y); No (N); Not determined (ND). * indicates a “stop codon”. Color code is shown for functional effects when expressed as homomeric Kir4.1. Note that pink coloration was given to “atypical” (=A) mutations which lead to partial EAST syndrome, that is, lack some of its characteristic features, as opposed to “typical,” featuring all cardinal symptoms Epilepsy, Ataxia, Sensorineural hearing loss, and renal Tubulopathy. LCL: Kir4.1 T290A was examined in patient-derived lymphoblast cells. (1) Compound heterozygous state. (2) With mutations in Slc26A4. (3) Compound heterozygous state. (4) With mutation in KCNT1. (5) With mutations in Slc26A4.
Figure 3Principles of astroglial K+ buffering. (A) Astrocytes are in close contact with Ranvier nodes, exposed parts of the axon between segments wrapped with myelin (light gray) provided by oligodendrocytes. The nodes “regenerate” the action potential as it travels in a saltatory (jumping) mode to the next node. Conduction between nodes is electrotonic. When firing, Na+ enters the axon, depolarizes the nodal axolemma and K+ is leaving the axon through K+ channels (Kanda et al., 2019). The ensuing K+ exit from the axon increases extracellular K+ locally and induces K+ uptake by astrocyte processes in close proximity. A prerequisite of locally restricted K+ uptake by astrocytes is their hyperpolarized membrane voltage (requiring Kir4.1 channels depicted in black). On the other hand, K+ uptake depolarizes the astrocyte membrane and enhances the driving force for K+ exit at areas closer to blood vessels, where the K+ concentration is low. In addition, K+ is also transferred by electrical coupling to neighboring astrocytes which are, at this moment in time, not surrounded by increased K+. Once the nodal axon repolarizes, the axolemmal Na+/K+-ATPase takes up K+ released slowly by the astrocyte. (B) When astrocytes lack functional Kir4.1 channels, extracellular K+ is expected to rise (darker yellow extracellular space), and spontaneous action potential generation ensues, explaining the epilepsy seen in EAST patients.
Figure 4Schematic of normal Kir4.1/Kir5.1 function in the DCT. Kir4.1/Kir5.1 heteromeric channels are localized in the basolateral membrane, which has numerous deep infoldings. There, the channel ensures that sufficient K+ is available to be taken up by the Na+/K+-ATPase (pump–leak coupling). Moreover, Kir4.1/Kir5.1 channels hyperpolarize the basolateral membrane, generating the driving force for the potential-dependent export of Mg2+ and Ca2+ and the efflux of Cl− through CLCKB/Barttin Cl− channels. The latter has implications for cytosolic Cl− concentration and is thought to indirectly modulate NCC activity. Ca2+ is also extruded basolaterally via Ca2+-ATPase (not shown). The molecular nature of the pathway for basolateral Mg2+ extrusion is still a matter of debate; likely candidates are shown.
Figure 5Simplified model explaining the hypokalemic phenotype of EAST/SeSAME patients. Inactivation of basolateral Kir4.1 in the distal convoluted tubule (DCT) results in reduced potential-driven transport across the basolateral membrane and inhibition of apical NCC-mediated uptake of NaCl. As a consequence, increased amounts of NaCl enter the collecting system (CS), where Na+ is taken up by ENaC and K+ is secreted by ROMK channels leading to urinary K+ loss. Inactivation of Kir4.1 in the CS worsens urinary K+ loss since apical ENaC and ROMK activities are unleashed and the physiological inhibition (via Kir4.1-dependent signaling) of both conductances under hypokalemic conditions is abrogated [modified from Penton et al. (2020)].
Figure 6Localization of disease-associated mutations in human Kir4.1 (A) and Kir5.1 (B). Functional consequences of Kir5.1 mutations were determined by coexpression with Kir4.1. Please note that functional deficits were more pronounced when Kir5.1 was coexpressed with Kir4.2 (Schlingmann et al., 2021; Neubauer et al., 2022). For more detailed information see Tables 1 and 2.
Mutations identified in KCNJ16/Kir5.1.
| Mutation | CADD Score | Associated phenotypes | Function with Kir4.1 | Function with Kir4.2 | Reference | |||
|---|---|---|---|---|---|---|---|---|
| H | A | D | SIDS | |||||
| K48* | 36 | Y | N | ND | ND | ND |
| |
| T64I | 23.8 | Y | N | Y | Reduced by 70% | Reduced by >90% |
| |
| I132R | 24.7 | Y | (Y) | Y | Reduced by 74% | Reduced by >90% |
| |
| G135A | 24.4 | Y | (Y) | Y | ND | ND |
| |
| R137C | 25.2 | Y | Y | Y | Reduced by 83% | Reduced by >90% |
| |
| R137S | 24.2 | ND | ND | ND | Y | Reduced by 80% | ND |
|
| R176* | 34 | Y | (Y) | Y | Reduced by 54% | Reduced by >90% |
| |
| A188S | 23.5 | ND | ND | ND | Y | Increased by 10% | ND |
|
| P250L | 23.4 | Y | (Y) | Y | Reduced by 39% | Reduced by >90% |
| |
| >25% Residual function | ||||||||
| <25% Residual function | ||||||||
| Atypical features | ||||||||
| Gain of function | ||||||||
| Function unknown | ||||||||
Table 2 summarizes the consequences of KCNJ16 mutations. CADD score according to https://cadd.gs.washington.edu/snv (Rentzsch et al., 2019). Associated phenotypes refer to hypokalemia (H), acidosis (A), sensorineural deafness (D), and a possible association with sudden infant death syndrome (SIDS). Yes (Y); probably Yes (Y); No (N); Not examined (ND). Color code is shown for functional effects when coexpressed with Kir4.1. * indicates a “stop codon”. Note that functional consequences were generally more severe when Kir5.1 mutants were coexpressed with Kir4.2 (Schlingmann et al., 2021).