Literature DB >> 35368594

Identification of Podocyte Cargo Proteins by Proteomic Analysis of Clathrin-Coated Vesicles.

Marwin Groener1,2,3, Ying Wang1, Elizabeth Cross1, Xuefei Tian1, Karen Ebenezer1, Eunice Baik1, Christopher Pedigo1, Mario Schiffer2,3,4, Kazunori Inoue1, Shuta Ishibe1.   

Abstract

Background: Clathrin-mediated endocytosis (CME) plays a fundamental role in podocyte health. Genetic ablation of genes implicated in CME has been shown to cause severe proteinuria and foot process effacement in mice. However, little is known about the cargo of clathrin-coated vesicles (CCVs) in podocytes. The goal of this study was to isolate CCVs from podocytes and identify their cargo by proteomic analysis.
Methods: Glomeruli isolated from Podocin-Cre Rosa-DTR flox mouse kidneys were seeded and treated with diphtheria toxin to obtain pure primary podocyte cultures. CCVs were isolated by differential gradient ultracentrifugation, and enrichment of CCVs was assessed by immunoblotting and electron microscopy (EM). Liquid chromatography-mass spectrometry (LC-MS) was performed for proteomic analysis. Proteins with higher abundance than transferrin receptor protein 1 were evaluated for CCV cargo potential against previously published literature. Immunofluorescence staining of identified cargo proteins and CCVs was performed in podocytes for further verification.
Results: Immunoblotting for multiple protein markers of CME revealed enrichment in the CCV fraction. Enrichment of CCVs among other small vesicles was observed via EM. Proteomics yielded a total of >1200 significant proteins. Multiple-step data analysis revealed 36 CCV-associated proteins, of which 10 represent novel, highly abundant cargo proteins in podocytes. Colocalization of cargo proteins and CCVs on immunostaining was observed. Conclusions: Our identification of podocyte CCV cargo proteins helps to elucidate the importance of endocytic trafficking for podocyte health and maintenance of the glomerular environment.
Copyright © 2020 by the American Society of Nephrology.

Entities:  

Keywords:  clathrin-coated vesicles; clathrin-mediated endocytosis; glomerular and tubulointerstitial diseases; glomerular diseases; immunoblotting; kidney glomerulus; mice; podocytes; proteomics

Mesh:

Year:  2020        PMID: 35368594      PMCID: PMC8809311          DOI: 10.34067/KID.0000212020

Source DB:  PubMed          Journal:  Kidney360        ISSN: 2641-7650


  54 in total

1.  Non-stoichiometric relationship between clathrin heavy and light chains revealed by quantitative comparative proteomics of clathrin-coated vesicles from brain and liver.

Authors:  Martine Girard; Patrick D Allaire; Peter S McPherson; Francois Blondeau
Journal:  Mol Cell Proteomics       Date:  2005-06-02       Impact factor: 5.911

2.  Role of LRP1 in transport of CCN2 protein in chondrocytes.

Authors:  Kazumi Kawata; Satoshi Kubota; Takanori Eguchi; Eriko Aoyama; Norifumi H Moritani; Seiji Kondo; Takashi Nishida; Masaharu Takigawa
Journal:  J Cell Sci       Date:  2012-03-27       Impact factor: 5.285

3.  Differential roles of syntaxin 7 and syntaxin 8 in endosomal trafficking.

Authors:  R Prekeris; B Yang; V Oorschot; J Klumperman; R H Scheller
Journal:  Mol Biol Cell       Date:  1999-11       Impact factor: 4.138

4.  Integrin α3 mutations with kidney, lung, and skin disease.

Authors:  Cristina Has; Giuseppina Spartà; Dimitra Kiritsi; Lisa Weibel; Alexander Moeller; Virginia Vega-Warner; Aoife Waters; Yinghong He; Yair Anikster; Philipp Esser; Beate K Straub; Ingrid Hausser; Detlef Bockenhauer; Benjamin Dekel; Friedhelm Hildebrandt; Leena Bruckner-Tuderman; Guido F Laube
Journal:  N Engl J Med       Date:  2012-04-19       Impact factor: 91.245

Review 5.  The function of endocytosis in podocytes.

Authors:  Keita Soda; Shuta Ishibe
Journal:  Curr Opin Nephrol Hypertens       Date:  2013-07       Impact factor: 2.894

6.  Interaction of dynamin I with NAP-22, a neuronal protein enriched in the presynaptic region.

Authors:  Satoko Ueno; Hiroshi Miyoshi; Yoko Maruyama; Mitsuhiro Morita; Shohei Maekawa
Journal:  Neurosci Lett       Date:  2018-03-28       Impact factor: 3.046

7.  Podocyte-associated talin1 is critical for glomerular filtration barrier maintenance.

Authors:  Xuefei Tian; Jin Ju Kim; Susan M Monkley; Nanami Gotoh; Ramiro Nandez; Keita Soda; Kazunori Inoue; Daniel M Balkin; Hossam Hassan; Sung Hyun Son; Yashang Lee; Gilbert Moeckel; David A Calderwood; Lawrence B Holzman; David R Critchley; Roy Zent; Jochen Reiser; Shuta Ishibe
Journal:  J Clin Invest       Date:  2014-02-17       Impact factor: 14.808

8.  TBC1D8B Loss-of-Function Mutations Lead to X-Linked Nephrotic Syndrome via Defective Trafficking Pathways.

Authors:  Guillaume Dorval; Valeryia Kuzmuk; Olivier Gribouval; Gavin I Welsh; Agnieszka Bierzynska; Alain Schmitt; Stéphanie Miserey-Lenkei; Ania Koziell; Shuman Haq; Alexandre Benmerah; Géraldine Mollet; Olivia Boyer; Moin A Saleem; Corinne Antignac
Journal:  Am J Hum Genet       Date:  2019-01-17       Impact factor: 11.025

9.  The molecular basis for the endocytosis of small R-SNAREs by the clathrin adaptor CALM.

Authors:  Sharon E Miller; Daniela A Sahlender; Stephen C Graham; Stefan Höning; Margaret S Robinson; Andrew A Peden; David J Owen
Journal:  Cell       Date:  2011-11-23       Impact factor: 41.582

10.  Contributions of epsinR and gadkin to clathrin-mediated intracellular trafficking.

Authors:  Jennifer Hirst; James R Edgar; Georg H H Borner; Sam Li; Daniela A Sahlender; Robin Antrobus; Margaret S Robinson
Journal:  Mol Biol Cell       Date:  2015-07-15       Impact factor: 4.138

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