Literature DB >> 35359334

Creating a User-Friendly and Open-Access Gene Expression Database for Comparing Embryonic Development and Regeneration in Nematostella vectensis.

Olivier Croce1,2, Eric Röttinger3,4.   

Abstract

The sea anemone Nematostella vectensis has emerged as a powerful research model to understand at the gene regulatory network level, to what extend regeneration recapitulates embryonic development. Such comparison involves massive transcriptomic analysis, a routine approach for identifying differential gene expression. Here we present a workflow to build a user-friendly, mineable, and open-access database providing access to the scientific community to various RNAseq datasets.
© 2022. The Author(s).

Entities:  

Keywords:  Cnidarian; Data mining; Database; Embryonic development; Nematostella vectensis; Open-access; RNAseq; Regeneration

Mesh:

Year:  2022        PMID: 35359334     DOI: 10.1007/978-1-0716-2172-1_35

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  2 in total

1.  Experimental Tools to Study Regeneration in the Sea Anemone Nematostella vectensis.

Authors:  Aldine R Amiel; Eric Röttinger
Journal:  Methods Mol Biol       Date:  2021

2.  Cas9-mediated excision of Nematostella brachyury disrupts endoderm development, pharynx formation and oral-aboral patterning.

Authors:  Marc D Servetnick; Bailey Steinworth; Leslie S Babonis; David Simmons; Miguel Salinas-Saavedra; Mark Q Martindale
Journal:  Development       Date:  2017-07-13       Impact factor: 6.868

  2 in total

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