| Literature DB >> 35355592 |
Song Chen1, Changhua Zheng2, Tianlai Chen3, Dianhua Huang1, Yuancheng Pan1, Shunyou Chen1.
Abstract
Background: Considering the antioxidant function of Vitamin C, also called ascorbic acid, it is widely used against viral infections such as coronavirus disease (COVID-19) based on in vitro, observational, and ecological studies. Many confounding factors that can affect Vitamin C levels. Thus, the association described to date may not be causal. To determine the causal relationship between genetically predicted plasma Vitamin C and COVID-19 susceptibility and severity, we performed two-sample Mendelian randomization (MR) based on large samples.Entities:
Keywords: COVID-19; Mendelian randomization study; SNP; Vitamin C; cause effect
Year: 2022 PMID: 35355592 PMCID: PMC8959865 DOI: 10.3389/fmed.2022.844228
Source DB: PubMed Journal: Front Med (Lausanne) ISSN: 2296-858X
Characteristics of SNPs for plasma Vitamin C from the GWAS meta-analysis.
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| 12 | 102081498 | rs10128996 | BCAS3 | A | G | 0.5925 | 0.0557 | 0.0063 | 78.17 | <1.00E-16 | 52,081 |
| 17 | 59448945 | rs1010269 | BCAS3 | A | G | 0.1791 | −0.0602 | 0.0082 | 53.90 | 2.56E-13 | 52,081 |
| 12 | 96249111 | rs117885456 | SNRPF | A | G | 0.0865 | 0.0781 | 0.0116 | 45.33 | 1.69E-11 | 52,081 |
| 5 | 137517504 | rs12517918 | KIF20A | T | C | 0.0379 | −0.1107 | 0.017 | 42.40 | 7.61E-11 | 52,081 |
| 1 | 2326009 | rs1123571 | RER1 | A | G | 0.4477 | −0.0393 | 0.0064 | 37.71 | 6.26E-10 | 52,081 |
| 5 | 138637444 | rs11242457 | MATR3 | A | G | 0.6912 | 0.0415 | 0.0069 | 36.17 | 2.02E-09 | 52,081 |
| 5 | 176799992 | rs10051765 | RGS14 | T | C | 0.6585 | −0.039 | 0.0066 | 34.92 | 3.64E-09 | 52,081 |
| 6 | 52735825 | rs6910581 | GSTA11P | T | C | 0.5693 | 0.0369 | 0.0063 | 34.31 | 4.47E-09 | 52,081 |
| 14 | 105253581 | rs10136000 | AKT1 | A | G | 0.2825 | 0.0404 | 0.0071 | 32.38 | 1.13E-08 | 52,081 |
| 11 | 61570783 | rs174547 | FADS1 | T | C | 0.6721 | −0.0364 | 0.0066 | 30.42 | 3.84E-08 | 52,081 |
Chr, chromosome; Pos, position for SNP; Closet gene, the nearest gene to Vitamin C associated SNP; Effect, the per-allele effect on plasma Vitamin C; P-value, the value for the genetic association; SNP, single-nucleotide polymorphism; EA, effect allele; OA, other allele; EAF, effect allele frequency; SE, standard error; N, sample size.
Sources of data for the analysis.
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| Plasma vitamin C levels | Zheng et al. ( | • Meta-analysis of GWAS of plasma Vitamin C levels |
| COVID-19 susceptibility | Susceptibility | • Meta-analysis of 35 GWASs performed in individuals of European ancestry from 14 countries: |
| COVID-19 severity | Hospitalized | • Meta-analysis of 22 GWASs performed in individuals of European ancestry from 14 countries: |
| Severe disease | • Meta-analysis of 15 GWASs performed in individuals of European ancestry from 10 countries: | |
COVID-19 susceptibility and severity outcomes are taken from the COVID-19 Host Genetics Initiative. See S1 Data for details on cohorts of COVID-19 susceptibility and severity phenotypes. BiPAP, bilevels positive airway pressure; CPAP, continuous positive airway pressure; GWAS, genome-wide association study.
Figure 1Forest plot of MR study using genetic instruments with COVID-19. (A) COVID-19 susceptibility, (B) COVID-19 hospitalization, (C) COVID-19 severe diseas. OR, odds ratio; IVW, inverse variance weighted; CI, confidence interval; MR, Mendelian randomization.
Figure 2Effect estimate for each individual variant via the radial plot and radial regression. (A) COVID-19 susceptibility, (B) COVID-19 hospitalization, (C) COVID-19 severe disease. IVW, inverse variance weighted.