Literature DB >> 35350881

Embedding entropy: a nonlinear measure of dynamical causality.

Jifan Shi1, Luonan Chen2,3,4,5, Kazuyuki Aihara1.   

Abstract

Research on concepts and computational methods of causality has a long history, and there are various concepts of causality as well as corresponding computing algorithms based on measured data. Here, by considering causes and effects from a dynamical perspective, we present a unified mathematical framework for the so-called dynamical causality (DC), which can detect causal interactions over time; notably, this framework covers Granger causality, transfer entropy, embedding causality and their conditional versions. Based on this framework, we further propose a causality criterion called embedding entropy (EE) to measure the DC between two variables. Moreover, its conditional version, conditional embedding entropy (cEE), is also derived for detecting conditional/direct causality. The significant advantages of EE and cEE are that they can be employed for solving not only nonlinear causal inference but also the non-separability problem, and they can reduce the scale bias in numerical calculation. The performance and robustness of EE and cEE were demonstrated through numerical simulations, and causal inference on various real-world datasets validated their effectiveness.

Entities:  

Keywords:  Granger causality; causality strength; delay-embedding theorem; dynamical causality; embedding entropy; non-separability problem

Mesh:

Year:  2022        PMID: 35350881      PMCID: PMC8965400          DOI: 10.1098/rsif.2021.0766

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  20 in total

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Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-01-08

3.  Chaos in a long-term experiment with a plankton community.

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4.  Generalized synchronization of chaos in directionally coupled chaotic systems.

Authors: 
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5.  Detecting connectivity in EEG: A comparative study of data-driven effective connectivity measures.

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-06       Impact factor: 11.205

7.  Inferring connectivity in networked dynamical systems: Challenges using Granger causality.

Authors:  Bethany Lusch; Pedro D Maia; J Nathan Kutz
Journal:  Phys Rev E       Date:  2016-09-27       Impact factor: 2.529

8.  Detecting causality in complex ecosystems.

Authors:  George Sugihara; Robert May; Hao Ye; Chih-hao Hsieh; Ethan Deyle; Michael Fogarty; Stephan Munch
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9.  TRENTOOL: a Matlab open source toolbox to analyse information flow in time series data with transfer entropy.

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Journal:  BMC Neurosci       Date:  2011-11-18       Impact factor: 3.288

10.  Distinguishing time-delayed causal interactions using convergent cross mapping.

Authors:  Hao Ye; Ethan R Deyle; Luis J Gilarranz; George Sugihara
Journal:  Sci Rep       Date:  2015-10-05       Impact factor: 4.379

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