Literature DB >> 3534883

Small nuclear RNAs from Saccharomyces cerevisiae: unexpected diversity in abundance, size, and molecular complexity.

N Riedel, J A Wise, H Swerdlow, A Mak, C Guthrie.   

Abstract

Previous work showed that the simple eukaryote Saccharomyces cerevisiae contains a group of RNAs with the general structural properties predicted for small nuclear RNAs (snRNAs), including possession of the characteristic trimethylguanosine 5'-terminal cap. It was also demonstrated that, unlike their metazoan counterparts, the yeast snRNAs are present in low abundance (200-500 molecules per haploid cell). We have now used antibody directed against the 5' cap to investigate the total set size of snRNAs in this organism. We present evidence that the number of distinct yeast snRNAs is on the order of several dozen, that the length of the capped RNAs can exceed 1000 nucleotides, and that the relative abundance of a subset of these RNAs is 1/5th to 1/20th that of the class of snRNAs described previously. These findings suggest that the six highly abundant species of snRNAs (U1-U6) typically reported in metazoans may represent a serious underestimation of the total diversity of snRNAs in eukaryotes.

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Year:  1986        PMID: 3534883      PMCID: PMC386874          DOI: 10.1073/pnas.83.21.8097

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  Primary and secondary structure of U8 small nuclear RNA.

Authors:  R Reddy; D Henning; H Busch
Journal:  J Biol Chem       Date:  1985-09-15       Impact factor: 5.157

2.  Accurate cleavage and polyadenylation of exogenous RNA substrate.

Authors:  C L Moore; P A Sharp
Journal:  Cell       Date:  1985-07       Impact factor: 41.582

3.  A small nuclear ribonucleoprotein associates with the AAUAAA polyadenylation signal in vitro.

Authors:  C Hashimoto; J A Steitz
Journal:  Cell       Date:  1986-05-23       Impact factor: 41.582

4.  U2 as well as U1 small nuclear ribonucleoproteins are involved in premessenger RNA splicing.

Authors:  D L Black; B Chabot; J A Steitz
Journal:  Cell       Date:  1985-10       Impact factor: 41.582

5.  The 3' splice site of pre-messenger RNA is recognized by a small nuclear ribonucleoprotein.

Authors:  B Chabot; D L Black; D M LeMaster; J A Steitz
Journal:  Science       Date:  1985-12-20       Impact factor: 47.728

6.  Are U4 small nuclear ribonucleoproteins involved in polyadenylation?

Authors:  S M Berget
Journal:  Nature       Date:  1984 May 10-16       Impact factor: 49.962

7.  Multiple factors including the small nuclear ribonucleoproteins U1 and U2 are necessary for pre-mRNA splicing in vitro.

Authors:  A R Krainer; T Maniatis
Journal:  Cell       Date:  1985-10       Impact factor: 41.582

8.  Human genes for U2 small nuclear RNA are tandemly repeated.

Authors:  S W Van Arsdell; A M Weiner
Journal:  Mol Cell Biol       Date:  1984-03       Impact factor: 4.272

9.  Deletion of a yeast small nuclear RNA gene impairs growth.

Authors:  D Tollervey; C Guthrie
Journal:  EMBO J       Date:  1985-12-30       Impact factor: 11.598

10.  The cDNA sequences of the sea urchin U7 small nuclear RNA suggest specific contacts between histone mRNA precursor and U7 RNA during RNA processing.

Authors:  K Strub; G Galli; M Busslinger; M L Birnstiel
Journal:  EMBO J       Date:  1984-12-01       Impact factor: 11.598

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  36 in total

1.  Interchangeable RNA polymerase I and II enhancers.

Authors:  Y Lorch; N F Lue; R D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

2.  Genetic analysis of small nuclear RNAs in Saccharomyces cerevisiae: viable sextuple mutant.

Authors:  R Parker; T Simmons; E O Shuster; P G Siliciano; C Guthrie
Journal:  Mol Cell Biol       Date:  1988-08       Impact factor: 4.272

3.  The 1997 Thomas Hunt Morgan Medal. Oliver Evans Nelson, Jr.

Authors:  B Ganetzky
Journal:  Genetics       Date:  1998-01       Impact factor: 4.562

4.  Differential distribution of factors involved in pre-mRNA processing in the yeast cell nucleus.

Authors:  J A Potashkin; R J Derby; D L Spector
Journal:  Mol Cell Biol       Date:  1990-07       Impact factor: 4.272

5.  Low abundance of telomerase in yeast: implications for telomerase haploinsufficiency.

Authors:  Amy D Mozdy; Thomas R Cech
Journal:  RNA       Date:  2006-08-07       Impact factor: 4.942

6.  Functional Cus1p is found with Hsh155p in a multiprotein splicing factor associated with U2 snRNA.

Authors:  M H Pauling; D S McPheeters; M Ares
Journal:  Mol Cell Biol       Date:  2000-03       Impact factor: 4.272

7.  Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs.

Authors:  A van Hoof; P Lennertz; R Parker
Journal:  Mol Cell Biol       Date:  2000-01       Impact factor: 4.272

8.  Isolation and sequence of four small nuclear U RNA genes of Trypanosoma brucei subsp. brucei: identification of the U2, U4, and U6 RNA analogs.

Authors:  J Mottram; K L Perry; P M Lizardi; R Lührmann; N Agabian; R G Nelson
Journal:  Mol Cell Biol       Date:  1989-03       Impact factor: 4.272

9.  Schizosaccharomyces U6 genes have a sequence within their introns that matches the B box consensus of tRNA internal promoters.

Authors:  D Frendewey; I Barta; M Gillespie; J Potashkin
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

10.  The interaction between Sgt1p and Skp1p is regulated by HSP90 chaperones and is required for proper CBF3 assembly.

Authors:  Linda B Lingelbach; Kenneth B Kaplan
Journal:  Mol Cell Biol       Date:  2004-10       Impact factor: 4.272

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