Literature DB >> 35346642

Long-range electrostatic interactions significantly modulate the affinity of dynein for microtubules.

Ashok Pabbathi1, Lawrence Coleman1, Subash Godar1, Apurba Paul2, Aman Garlapati3, Matheu Spencer1, Jared Eller4, Joshua Daniel Alper5.   

Abstract

The dynein family of microtubule minus-end-directed motor proteins drives diverse functions in eukaryotic cells, including cell division, intracellular transport, and flagellar beating. Motor protein processivity, which characterizes how far a motor walks before detaching from its filament, depends on the interaction between its microtubule-binding domain (MTBD) and the microtubule. Dynein's MTBD switches between high- and low-binding affinity states as it steps. Significant structural and functional data show that specific salt bridges within the MTBD and between the MTBD and the microtubule govern these affinity state shifts. However, recent computational work suggests that nonspecific, long-range electrostatic interactions between the MTBD and the microtubule may also play an important role in the processivity of dynein. To investigate this hypothesis, we mutated negatively charged amino acids remote from the dynein MTBD-microtubule-binding interface to neutral residues and measured the binding affinity using microscale thermophoresis and optical tweezers. We found a significant increase in the binding affinity of the mutated MTBDs for microtubules. Furthermore, we found that charge screening by free ions in solution differentially affected the binding and unbinding rates of MTBDs to microtubules. Together, these results demonstrate a significant role for long-range electrostatic interactions in regulating dynein-microtubule affinity. Moreover, these results provide insight into the principles that potentially underlie the biophysical differences between molecular motors with various processivities and protein-protein interactions more generally.
Copyright © 2022 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2022        PMID: 35346642      PMCID: PMC9117880          DOI: 10.1016/j.bpj.2022.03.029

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   3.699


  70 in total

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2.  Structural evidence for solvent-stabilisation by aspartic acid as a mechanism for halophilic protein stability in high salt concentrations.

Authors:  Samuel Lenton; Danielle L Walsh; Natasha H Rhys; Alan K Soper; Lorna Dougan
Journal:  Phys Chem Chem Phys       Date:  2016-06-21       Impact factor: 3.676

3.  Unique amino acid composition of proteins in halophilic bacteria.

Authors:  Satoshi Fukuchi; Kazuaki Yoshimune; Mamoru Wakayama; Mitsuaki Moriguchi; Ken Nishikawa
Journal:  J Mol Biol       Date:  2003-03-21       Impact factor: 5.469

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Authors:  W B Redwine; R Hernandez-Lopez; S Zou; J Huang; S L Reck-Peterson; A E Leschziner
Journal:  Science       Date:  2012-09-21       Impact factor: 47.728

Review 5.  Activation and Regulation of Cytoplasmic Dynein.

Authors:  John T Canty; Ahmet Yildiz
Journal:  Trends Biochem Sci       Date:  2020-03-05       Impact factor: 13.807

Review 6.  Cytoplasmic dynein in neurodegeneration.

Authors:  Judith Eschbach; Luc Dupuis
Journal:  Pharmacol Ther       Date:  2011-03-21       Impact factor: 12.310

7.  Protein helical structure determination using CD spectroscopy for solutions with strong background absorbance from 190 to 230nm.

Authors:  Yang Wei; Aby A Thyparambil; Robert A Latour
Journal:  Biochim Biophys Acta       Date:  2014-10-13

8.  Multiscale method for modeling binding phenomena involving large objects: application to kinesin motor domains motion along microtubules.

Authors:  Lin Li; Joshua Alper; Emil Alexov
Journal:  Sci Rep       Date:  2016-03-18       Impact factor: 4.379

9.  Calculating the force-dependent unbinding rate of biological macromolecular bonds from force-ramp optical trapping assays.

Authors:  Apurba Paul; Joshua Alper
Journal:  Sci Rep       Date:  2022-01-07       Impact factor: 4.379

10.  Structure and functional role of dynein's microtubule-binding domain.

Authors:  Andrew P Carter; Joan E Garbarino; Elizabeth M Wilson-Kubalek; Wesley E Shipley; Carol Cho; Ronald A Milligan; Ronald D Vale; I R Gibbons
Journal:  Science       Date:  2008-12-12       Impact factor: 47.728

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