| Literature DB >> 35342562 |
Bo Yang1,2, Zhenzhen Cui1,2, Meihong Ning1,2, Yu Chen1,2, Zhengjun Wu1,2, Huayuan Huang1,2.
Abstract
Intestinal microbiota play an important role in the life of amphibians and its composition may vary by developmental stage. In this study, 16S rRNA high-throughput sequencing was used to profile the intestinal microbiota of Hynobius maoershanensis, which exclusively inhabit the Maoer Mountain swamp at an altitude of approximately 2,000 m. We characterized the bacterial composition, structure, and function of the microbiota of H. maoershanensis at different developmental stages. The alpha diversity was not markedly different for the Simpson, Shannon, Ace, and Sobs indices of microbes. The beta diversity revealed that there were age-related differences in the structure of the intestinal microbes of H. maoershanensis, specifically, at the phylum level. Bacteroidetes and Proteobacteria were the dominant bacteria present in the adult stage, and the relative abundance of Bacteroidetes was significantly higher compared with that of tadpoles. Firmicutes and Proteobacteria were the dominant phylum during the tadpole stage and their relative abundance was significantly higher compared with the adult period. Functional analysis revealed that the pathways associated with organismal systems and metabolism were significantly enriched in the adults, whereas human diseases, genetic information processing, and cellular processes were more enriched in the hindlimb bud stage. Human diseases and environmental information processing were more enriched in the forelimb bud stage at KEGG pathway level 1. Possibilities for the observed discrepancies include the adaptation to eating habits and the remodeling of the intestines during development. We speculated that H. maoershanensis adults may be more suitable to a high-fiber diet, whereas the tadpoles are associated with a carnivorous diet. Our study provides evidence of variations in the intestinal microbiota during development in amphibians, highlighting the influence of historical developments on the intestinal microbiota and an increased understanding of the importance of physiological characteristics in shaping the intestinal microbiota of amphibians. These data will help us formulate more effective protection measures for H. maoershanensis.Entities:
Keywords: Hynobius maoershanensis; developmental stage; intestinal microbiota
Year: 2022 PMID: 35342562 PMCID: PMC8931708 DOI: 10.1002/ece3.8712
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Host information of 73 anal swab samples of H. maoershanensis
| Adult | Hindlimb bud stage | Forelimb bud stage | |
|---|---|---|---|
| Total length (mm) | 165.04 ± 12.42 | 63.96 ± 7.88 | 27.42 ± 36.61 |
| Weight (g) | 21.09 ± 5.00 | 1.82 ± 0.67 | 0.23 ± 0.17 |
FIGURE 1Rarefaction curves and rank‐abundance distribution curves
Alpha diversity index of H. maoershanensis gut microbiota (a: forelimb bud stage and hindlimb bud stage b: forelimb bud stage and adults c: hindlimb bud stage and adults)
| Hindlimb bud stage | Forelimb bud stage |
|
| |
|---|---|---|---|---|
| (a) | ||||
| Sobs | 19.167 ± 9.98 | 14.467 ± 5.847 | .108 | 0.396 |
| Shannon | 0.932 ± 0.529 | 0.799 ± 0.262 | .237 | 0.396 |
| Simpson | 0.551 ± 0.255 | 0.569 ± 0.151 | .351 | 0.396 |
| Ace | 21.437 ± 10.5 | 19.768 ± 15.004 | .396 | 0.396 |
FIGURE 2Beta diversity difference in gut microbiota at different developmental stages. (a) unweighted‐unfair; (b) weighted‐infair
FIGURE 3Gut microbiota composition at the phylum and family level
FIGURE 4Gut microbiota composition at the phylum level
FIGURE 5Gut microbiota composition at the family level
FIGURE 6The gut microbiota composition and difference at the phylum level at different developmental stages
FIGURE 7The gut microbiota composition and difference at the family level at different developmental stages
FIGURE 8The LEfSe of gut microbiota abundance
Differences in KEGG Pathways Level 1
| Pathway in level 1 | Relative abundance (%) | Mann–Whitney | |||
|---|---|---|---|---|---|
| Forelimb bud stage | Hindlimb bud stage | Adult |
|
| |
| Metabolism | 38.43 ± 0.36 | 37.06 ± 0.38 | 40.12 ± 0.37 | −4.631 | .000 |
| Human Diseases | 25.58 ± 0.03 | 24.99 ± 0.03 | 24.84 ± 0.03 | −4.501 | .000 |
| Genetic Information Processing | 15.57 ± 0.40 | 18.04 ± 0.49 | 15.64 ± 0.43 | −4.386 | .000 |
| Environmental Information Processing | 16.01 ± 1.24 | 15.27 ± 1.14 | 15.1 ± 1.21 | −3.073 | .002 |
| Cellular Processes | 3.64 ± 0.23 | 3.92 ± 0.25 | 3.48 ± 0.22 | −4.111 | .000 |
| Organismal Systems | 0.77 ± 0.05 | 0.72 ± 0.04 | 0.82 ± 0.05 | −3.982 | .000 |
| Unclassified | 0.00 ± 1.01 | 0.00 ± 1.03 | 0.00 ± 0.94 | −4.645 | .000 |