Literature DB >> 35342498

INFORMATION CONTENT OF HIGH-ORDER ASSOCIATIONS OF THE HUMAN GUT MICROBIOTA NETWORK.

Weston D Viles1, Juliette C Madan2, Hongzhe Li3, Margaret R Karagas2, Anne G Hoen1.   

Abstract

The human gastrointestinal tract is an environment that hosts an ecosystem of microorganisms essential to human health. Vital biological processes emerge from fundamental inter- and intra-species molecular interactions that influence the assembly and composition of the gut microbiota ecology. Here we quantify the complexity of the ecological relationships within the human infant gut microbiota ecosystem as a function of the information contained in the nonlinear associations of a sequence of increasingly-specified maximum entropy representations of the system. Our paradigm frames the ecological state, in terms of the presence or absence of individual microbial ecological units that are identified by amplicon sequence variants (ASV) in the gut microenvironment, as a function of both the ecological states of its neighboring units and, in a departure from standard graphical model representations, the associations among the units within its neighborhood. We characterize the order of the system based on the relative quantity of statistical information encoded by high-order statistical associations of the infant gut microbiota.

Entities:  

Keywords:  Ecosystem; Gut Microbiota; High-order Associations; Information; Relative Entropy

Year:  2021        PMID: 35342498      PMCID: PMC8955221          DOI: 10.1214/21-aoas1449

Source DB:  PubMed          Journal:  Ann Appl Stat        ISSN: 1932-6157            Impact factor:   2.083


  36 in total

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Authors:  Eric D Kelsic; Jeffrey Zhao; Kalin Vetsigian; Roy Kishony
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Review 6.  The ecological community of commensal, symbiotic, and pathogenic gastrointestinal microorganisms - an appraisal.

Authors:  Seraj Zohurul Haque; Mainul Haque
Journal:  Clin Exp Gastroenterol       Date:  2017-05-05

7.  Does birth mode modify associations of maternal pre-pregnancy BMI and gestational weight gain with the infant gut microbiome?

Authors:  Sirtaj B Singh; Juliette Madan; Modupe Coker; Anne Hoen; Emily R Baker; Margaret R Karagas; Noel T Mueller
Journal:  Int J Obes (Lond)       Date:  2019-02-14       Impact factor: 5.095

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Authors:  Saeed Shoaie; Fredrik Karlsson; Adil Mardinoglu; Intawat Nookaew; Sergio Bordel; Jens Nielsen
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Authors:  Alban Ramette
Journal:  FEMS Microbiol Ecol       Date:  2007-09-20       Impact factor: 4.194

10.  Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects.

Authors:  Susan M Huse; Vincent B Young; Hilary G Morrison; Dionysios A Antonopoulos; John Kwon; Sushila Dalal; Rose Arrieta; Nathaniel A Hubert; Lici Shen; Joseph H Vineis; Jason C Koval; Mitchell L Sogin; Eugene B Chang; Laura E Raffals
Journal:  Microbiome       Date:  2014-02-14       Impact factor: 14.650

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