Literature DB >> 35336683

Towards a Stochastic Model to Simulate Grapevine Architecture: A Case Study on Digitized Riesling Vines Considering Effects of Elevated CO2.

Dominik Schmidt1, Katrin Kahlen1, Christopher Bahr1, Matthias Friedel2.   

Abstract

Modeling plant growth, in particular with functional-structural plant models, can provide tools to study impacts of changing environments in silico. Simulation studies can be used as pilot studies for reducing the on-field experimental effort when predictive capabilities are given. Robust model calibration leads to less fragile predictions, while introducing uncertainties in predictions allows accounting for natural variability, resulting in stochastic plant growth models. In this study, stochastic model components that can be implemented into the functional-structural plant model Virtual Riesling are developed relying on Bayesian model calibration with the goal to enhance the model towards a fully stochastic model. In this first step, model development targeting phenology, in particular budburst variability, phytomer development rate and internode growth are presented in detail. Multi-objective optimization is applied to estimate a single set of cardinal temperatures, which is used in phenology and growth modeling based on a development days approach. Measurements from two seasons of grapevines grown in a vineyard with free-air carbon dioxide enrichment (FACE) are used; thus, model building and selection are coupled with an investigation as to whether including effects of elevated CO2 conditions to be expected in 2050 would improve the models. The results show how natural variability complicates the detection of possible treatment effects, but demonstrate that Bayesian calibration in combination with mixed models can realistically recover natural shoot growth variability in predictions. We expect these and further stochastic model extensions to result in more realistic virtual plant simulations to study effects, which are used to conduct in silico studies of canopy microclimate and its effects on grape health and quality.

Entities:  

Keywords:  Bayesian statistics; VineyardFACE; Vitis vinifera; functional-structural plant models; model selection

Year:  2022        PMID: 35336683      PMCID: PMC8953974          DOI: 10.3390/plants11060801

Source DB:  PubMed          Journal:  Plants (Basel)        ISSN: 2223-7747


  30 in total

1.  Bayes offers a 'new' way to make sense of numbers.

Authors:  D Malakoff
Journal:  Science       Date:  1999-11-19       Impact factor: 47.728

2.  Bayesian model assessment and comparison using cross-validation predictive densities.

Authors:  Aki Vehtari; Jouko Lampinen
Journal:  Neural Comput       Date:  2002-10       Impact factor: 2.026

3.  Using functional–structural plant models to study, understand and integrate plant development and ecophysiology.

Authors:  Theodore M DeJong; David Da Silva; Jan Vos; Abraham J Escobar-Gutiérrez
Journal:  Ann Bot       Date:  2011-10       Impact factor: 4.357

4.  Warm spring temperatures induce persistent season-long changes in shoot development in grapevines.

Authors:  Markus Keller; Julie M Tarara
Journal:  Ann Bot       Date:  2010-05-31       Impact factor: 4.357

5.  Nonlinear temperature effects indicate severe damages to U.S. crop yields under climate change.

Authors:  Wolfram Schlenker; Michael J Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-28       Impact factor: 11.205

6.  Detecting nonlinear response of spring phenology to climate change by Bayesian analysis.

Authors:  Katherine S Pope; Volker Dose; David Da Silva; Patrick H Brown; Charles A Leslie; Theodore M Dejong
Journal:  Glob Chang Biol       Date:  2013-02-05       Impact factor: 10.863

7.  Combining Genome-Wide Information with a Functional Structural Plant Model to Simulate 1-Year-Old Apple Tree Architecture.

Authors:  Vincent Migault; Benoît Pallas; Evelyne Costes
Journal:  Front Plant Sci       Date:  2017-01-12       Impact factor: 5.753

8.  Helios: A Scalable 3D Plant and Environmental Biophysical Modeling Framework.

Authors:  Brian N Bailey
Journal:  Front Plant Sci       Date:  2019-10-18       Impact factor: 5.753

9.  Phenological Model to Predict Budbreak and Flowering Dates of Four Vitis vinifera L. Cultivars Cultivated in DO. Ribeiro (North-West Spain).

Authors:  Alba Piña-Rey; Helena Ribeiro; María Fernández-González; Ilda Abreu; F Javier Rodríguez-Rajo
Journal:  Plants (Basel)       Date:  2021-03-08
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