| Literature DB >> 35330631 |
Claudia-Corina Giese1,2, Inge Loes Ten Kate2, Martijn P A van den Ende3, Mariette Wolthers2, José C Aponte4,5,6, Eloi Camprubi2, Jason P Dworkin4, Jamie E Elsila4, Suzanne Hangx2, Helen E King2, Hannah L Mclain4,5,6, Oliver Plümper2, Alexander G G M Tielens1.
Abstract
Amino acids and polycyclic aromatic hydrocarbons (PAHs) belong to the range of organic compounds detected in meteorites. In this study, we tested empirically and theoretically if PAHs are precursors for amino acids in carbonaceous chondrites, as previously suggested. We conducted experiments to synthesize amino acids from fluoranthene (PAH), with ammonium bicarbonate as a source for ammonia and carbon dioxide under mimicked asteroidal conditions. In our thermodynamic calculations, we extended our analysis to additional PAH-amino acid combinations. We explored 36 reactions involving the PAHs naphthalene, anthracene, fluoranthene, pyrene, triphenylene, and coronene and the amino acids glycine, alanine, valine, leucine, phenylalanine, and tyrosine. Our experiments do not show the formation of amino acids, whereas our theoretical results hint that PAHs could be precursors of amino acids in carbonaceous chondrites at low temperatures.Entities:
Year: 2022 PMID: 35330631 PMCID: PMC8935471 DOI: 10.1021/acsearthspacechem.1c00329
Source DB: PubMed Journal: ACS Earth Space Chem Impact factor: 3.475
Overview of All Experiments Performed with the Corresponding LC-FD/ToF-MS Resultsa
| AccQ-Tag results [10–8 M] | ||||||||
|---|---|---|---|---|---|---|---|---|
| no. | fluoranthene [g] | ammonium bicarbonate [g] | olivine [g] | serine | glycine | alanine | proline | |
| set 1 | ||||||||
| 1 | 0.003 | 0.003 | – | 100 | <0.01 | <0.01 | <0.01 | <0.01 |
| 2 | 0.003 | 0.003 | 100 | <0.01 | <0.01 | <0.01 | <0.01 | |
| 3 | 0.003 | 0.003 | 100 | <0.01 | <0.01 | <0.01 | <0.01 | |
| 4 | 0.003 | 0.003 | 100 | 1.65 ± 0.14 | 3.11 ± 0.35 | 0.73 ± 0.04 | 0.45 ± 0.35 | |
| 5 | 100 | <0.01 | <0.01 | <0.01 | <0.01 | |||
| 6 | 0.003 | 0.003 | 150 | <0.01 | <0.01 | <0.01 | <0.01 | |
| 7 | 0.003 | 0.003 | 150 | <0.01 | <0.01 | <0.01 | <0.01 | |
| 8 | 0.003 | 0.003 | 150 | <0.01 | <0.01 | <0.01 | <0.01 | |
| 9 | 150 | <0.01 | <0.01 | <0.01 | <0.01 | |||
Two sets of experiments were performed, where we exposed mixtures of fluoranthene, water, and ammonium bicarbonate without (set 1) or with (Set 2) olivine powder to 100 and 150 °C. The starting material has been exposed to a temperature (T) of either 150 or 100 °C in anoxic (argon) atmosphere for 206 h. All experiments contained 1 mL of anoxic water. Experiment 5 of set 2 has not been analyzed due to an error in the experiment procedure. Experiments 5 and 9 of set 1 and experiments 3, 4, 9, 10, and 10 of set 2 are blank tests. The detection limit is at 10–8 M. Set 3 was solely performed to be used to carry out pH measurements, and were not further analyzed after the pH measurement.
Physical Properties and Thermodynamic Data, Relevant for This Study, of Polycyclic Aromatic Hydrocarbons and Amino Acids at 298.15 Ka
| Δ | melting point
[°C][ | Boiling point
[°C][ | solubility
in water [mol/L][ | ||||
|---|---|---|---|---|---|---|---|
| naphthalene | C10H8 | 78.53[ | 0.17[ | 0.17[ | 80.2 | 218 | 3.94 × 10–4 |
| anthracene | C14H10 | 96.10[ | 0.25[ | 0.22[ | 216.0 | 314 | 2.04 × 10–7 |
| fluoranthene | C16H10 | 129.20[ | 0.21[ | 0.21[ | 110.2 | 380 | 1.91 × 10–6 |
| pyrene | C16H10 | 189.90[ | 0.23[ | 0.23[ | 150.6 | 394 | 9.23 × 10–7 |
| triphenylene | C18H12 | 125.50[ | 0.22[ | 0.23[ | 197.8 | 425 | 2.17 × 10–7 |
| coronene | C24H12 | 151.80[ | 0.25[ | 0.26[ | 437.3 | 525 | 3.20 × 10–10 |
| glycine | C2H5NO2 | –528.50[ | 0.28[ | 0.31[ | 290.0 | decomposed | 7.83 × 10–1 |
| alanine | C3H7NO2 | –604.00[ | 0.10[ | 0.10[ | 297.0 | decomposed | 5.62 × 10–1 |
| valine | C5H11NO2 | –617.90[ | 0.13[ | 0.12[ | 315.0 | sublimated | 2.81 × 10–1 |
| leucine | C6H13NO2 | –637.40[ | 0.18[ | 0.17[ | 293.0 | sublimated | 8.12 × 10–2 |
| phenylalanine | C9H11NO2 | –466.90[ | 0.21[ | 0.20[ | 283.0 | decomposed | 9.86 × 10–2 |
| tyrosine | C9H11NO3 | –685.1[ | 0.21[ | 0.20[ | 343.0 | decomposed | 1.48 × 10–3 |
ΔH° = enthalpy of formation, S° = standard molar entropy, and c = heat capacity.
PAH is either decomposed or sublimated above its melting point.
Thermodynamic Data of the NH4HCO3–NH3–CO2 System at 298.15 K with ΔH = Enthalpy of Formation, S° = Standard Molar Entropy, and c = Heat Capacity Relevant for This Studya
| polynomial coefficients for Shomate equations[ | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Δ | |||||||||||||
| ammonium bicarbonate | NH4 HCO3 | (s) | –849.4[ | 0.12[ | |||||||||
| carbon dioxide | CO2 | (aq) | –413.26[ | 0.12[ | 0.28[ | ||||||||
| carbon dioxide | CO2 | (g) | –393.51[ | 0.21[ | 25 | 55.19 | –33.69 | 7.95 | –0.14 | –403.61 | 228.24 | –393.52 | |
| carbonate | CO32– | (aq) | –677.14[ | –0.06[ | –0.23[ | ||||||||
| bicarbonate | HCO3– | (aq) | –691.99[ | 0.09[ | 0.09[ | ||||||||
| carbonic acid | H2CO3 | (s) | –699.65[ | 0.19[ | |||||||||
| ammonia | NH3 | (aq) | –81.15[ | 0.11[ | |||||||||
| ammonia | NH3 | (g) | –45.9[ | 0.19[ | 20 | 49.77 | –15.38 | 1.92 | 0.19 | –53.31 | 203.86 | –45.9 | |
| ammonium | NH4+ | (aq) | –132.5[ | 0.11[ | 0.08[ | ||||||||
| water | H2O | (l) | –285.83[ | 0.07[ | –203.61 | 1523.29 | –3196.41 | 2474.46 | 3.86 | –256.55 | –488.72 | –285.83 | |
| hydroxide ion | OH– | (aq) | –229.994[ | –0.01[ | |||||||||
| hydrogen | H+ | (aq) | 0[ | 0[ | |||||||||
The polynomial coefficients for the Shomate equations were used for the calculation of the enthalpy and entropy (eq and 5) of CO2, NH3, and H2O.
Gibbs Free Energy of Reaction ΔG [kJ/mol] and Equilibrium Constants log K for the Formation of 1 mol of Amino Acid at 25, 100, and 150 °Ca
| Δ | Δ | Δ | log | log | log | |
|---|---|---|---|---|---|---|
| naphthalene | ||||||
| 1/8C10H8 + 3/4CO2 + 1NH3 + 1/2H2O = 1C2H5NO2 | 40.5 | 53.5 | 63.6 | –7.1 | –7.5 | –7.9 |
| 1/4C10H8 + 1/2CO2 + 1NH3 + 1H2O = 1C3H7NO2 | –5.2 | 7.4 | 17.0 | 0.9 | –1.0 | –2.1 |
| 1/2C10H8 + 1NH3 + 1/2H2O = 1C5H11NO2 | 40.9 | 53.0 | 61.7 | –7.2 | –7.4 | –7.6 |
| 5/8C10H8 + 1NH3 + 15/2H2O = 1C6H13NO2 + 1/4CO2 | 49.1 | 60.2 | 67.8 | –8.6 | –8.4 | –8.4 |
| 5/6C10H8 + 2/3CO2 + 1NH3 + 2/3H2O = 1C9H11NO2 | 63.0 | 76.7 | 87.3 | –11.0 | –10.7 | –10.8 |
| 19/24C10H8 + 11/12CO2 + 1NH3 + 5/6H2O = 1C9H11NO3 | 83.9 | 102.7 | 117.7 | –14.7 | –14.4 | –14.5 |
| anthracene | ||||||
| 1/11C14H10 + 8/11CO2 + 1NH3 + 6/11H2O = 1C2H5NO2 | 41.5 | 55.3 | 66.0 | –7.3 | –7.6 | –7.9 |
| 2/11C14H10 + 5/11CO2 + 1NH3 + 11/11H2O = 1C3H7NO2 | –2.9 | 11.1 | 21.9 | 0.5 | –1.3 | –2.3 |
| 4/11C14H10 + 1NH3 + 22/11H2O = 1C5H11NO2 + 1/11CO2 | 45.1 | 60.4 | 71.6 | –7.9 | –7.9 | –8.0 |
| 5/11C14H10 + 1NH3 + 28/11H2O = 1C6H13NO2 + 4/11CO2 | 55.6 | 69.4 | 80.2 | –9.7 | –9.2 | –9.0 |
| 20/33C14H10 + 17/33CO2 + 1NH3 + 22/33H2O = 1C9H11NO2 | 70.6 | 89.0 | 103.8 | –12.4 | –11.7 | –11.5 |
| 19/33C14H10 + 31/33CO2 + 1NH3 + 14/33H2O = 1C9H11NO3 | 90.9 | 112.8 | 131.7 | –15.9 | –15.2 | –15.1 |
| fluoranthene | ||||||
| 3/37C16H10 + 26/37CO2 + 1NH3 + 22/37H2O = 1C2H5NO2 | 42.3 | 55.1 | 65.0 | –7.4 | –7.7 | –7.9 |
| 6/37C16H10 + 15/37CO2 + 1NH3 + 4/37H2O = 1C3H7NO2 | –2.1 | 10.2 | 19.4 | 0.4 | –1.4 | –1.9 |
| 12/37C16H10 + 1NH3 + 114/37H2O = 1C5H11NO2 + 7/37CO2 | 47.6 | 59.0 | 66.9 | –8.3 | –8.3 | –8.3 |
| 15/37C16H10 + 1NH3 + 236/37H2O = 1C6H13NO2 + 18/37CO2 | 56.0 | 66.2 | 72.9 | –9.8 | –9.3 | –9.1 |
| 20/37C16H10 + 13/37CO2 + 1NH3 + 111/37H2O = 1C9H11NO2 | 73.4 | 86.0 | 95.4 | –12.9 | –12.0 | –11.9 |
| 19/37C16H10 + 29/37CO2 + 1NH3 + 116/37H2O = 1C9H11NO3 | 92.8 | 110.5 | 124.3 | –16.3 | –15.5 | –15.4 |
| pyrene | ||||||
| 3/37C16H10 + 26/37CO2 + 1NH3 + 22/37H2O = 1C2H5NO2 | 47.4 | 60.1 | 70.0 | –8.3 | –8.4 | –8.6 |
| 6/37C16H10 + 15/37CO2 + 1NH3 + 4/37H2O = 1C3H7NO2 | 8.1 | 20.3 | 29.4 | –1.4 | –2.8 | –3.6 |
| 12/37C16H10 + 1NH3 + 114/37H2O = 1C5H11NO2 + 7/37CO2 | 67.9 | 79.2 | 87.0 | –11.9 | –11.1 | –10.7 |
| 15/37C16H10 + 1NH3 + 236/37H2O = 1C6H13NO2 + 18/37CO2 | 81.4 | 91.4 | 98.0 | –14.3 | –12.8 | –12.1 |
| 20/37C16H10 + 13/37CO2 + 1NH3 + 111/37H2O = 1C9H11NO2 | 107.3 | 119.7 | 128.9 | –18.8 | –16.8 | –15.9 |
| 19/37C16H10 + 29/37CO2 + 1NH3 + 116/37H2O = 1C9H11NO3 | 125.0 | 142.5 | 156.1 | –21.9 | –20.0 | –19.3 |
| triphenylene | ||||||
| 1/14C18H12 + 5/7CO2 + 1NH3 + 2/7H2O = 1C2H5NO2 | 44.2 | 56.9 | 66.8 | –7.7 | –8.0 | –8.2 |
| 1/7C18H12 + 3/7CO2 + 1NH3 + 11/7H2O = 1C3H7NO2 | 1.9 | 14.1 | 23.2 | –0.3 | –2.0 | –2.9 |
| 2/7C18H12 + 1NH3 + 22/7H2O = 1C5H11NO2 + 1/7CO2 | 57.8 | 69.0 | 76.8 | –10.1 | –9.7 | –9.5 |
| 5/14C18H12 + 1NH3 + 26/7H2O = 1C6H13NO2 + 3/7CO2 | 69.3 | 79.3 | 85.8 | –12.1 | –11.1 | –10.6 |
| 10/21C18H12 + 3/7CO2 + 1NH3 + 11/7H2O = 1C9H11NO2 | 88.2 | 100.3 | 109.4 | –15.4 | –14.0 | –13.5 |
| 19/42C18H12 + 12/13CO2 + 1NH3 + 12/7H2O = 1C9H11NO3 | 110.0 | 127.3 | 140.9 | –19.3 | –17.8 | –17.4 |
| coronene | ||||||
| 1/18C24H12 + 2/3CO2 + 1NH3 + 2/3H2O = 1C2H5NO2 | 54.6 | 67.1 | 76.8 | –9.6 | –9.4 | –9.5 |
| 1/9C24H12 + 1/3CO2 + 1NH3 + 11/3H2O = 1C3H7NO2 | 21.2 | 32.9 | 41.7 | –3.7 | –4.6 | –5.2 |
| 2/9C24H12 + 1NH3 + 22/3H2O = 1C5H11NO2 + 1/3CO2 | 97.2 | 107.6 | 114.7 | –17.0 | –15.1 | –14.2 |
| 5/18C24H12 + 1NH3 + 12/3H2O = 1C6H13NO2 + 2/3CO2 | 116.7 | 125.7 | 131.4 | –20.4 | –17.6 | –16.2 |
| 10/27C24H12 + 1/3CO2 + 1NH3 + 2/3H2O = 1C9H11NO2 | 155.1 | 166.1 | 174.1 | –27.2 | –23.3 | –21.5 |
| 19/54C24H12 + 15/27CO2 + 1NH3 + 124/27H2O = 1C9H11NO3 | 171.6 | 187.8 | 200.3 | –30.1 | –26.3 | –24.7 |
Amino acids: glycine (C2H5NO2), alanine (C3H7NO2), valine (C5H11NO2), leucine (C6H13NO2), phenylalanine (C9H11NO2), and tyrosine (C9H11NO3). PAHs: naphthalene (C8H10), anthracene (C14H10), fluoranthene (C16H10), pyrene (C16H10), triphenylene (C18H12), and coronene (C24H12).
Figure 1Calculated CO2–NH3–H2O system for the initial concentration of ammonium bicarbonate of 3.79 × 10–2 M at 20 °C. With subsequent increasing temperature, pH and dissolved gas concentrations evolve.
Indication of the Spontaneity for each PAH–Amino Acid Reaction at 25, 100, and 150 °Ca
| 25 °C | 100 °C | 150 °C | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Reaction | Δ | Δ | Δ | Δ | Δ | Δ | Δ | Δ | Δ | Spontaneity |
| NAPH - GLY | - | - | + | - | - | + | - | - | + | nonspontaneous |
| NAPH - ALA | - | - | - | - | - | + | - | - | + | spontaneous at low T |
| NAPH - VAL | - | - | + | - | - | + | - | - | + | nonspontaneous |
| NAPH - LEU | + | - | + | + | - | + | + | - | + | nonspontaneous |
| NAPH - PHE | + | - | + | + | - | + | + | - | + | nonspontaneous |
| NAPH - TYR | + | - | + | + | - | + | + | - | + | nonspontaneous |
| ANTH - GLY | - | - | + | - | - | + | - | - | + | nonspontaneous |
| ANTH - ALA | - | - | - | - | - | + | - | - | + | spontaneous at low T |
| ANTH -VAL | + | - | + | - | - | + | - | - | + | nonspontaneous |
| ANTH - LEU | + | - | + | + | - | + | + | - | + | nonspontaneous |
| ANTH - PHE | + | - | + | + | - | + | + | - | + | nonspontaneous |
| ANTH - TYR | + | - | + | + | - | + | + | - | + | nonspontaneous |
| FLUO - GLY | - | - | + | - | - | + | - | - | + | nonspontaneous |
| FLUO - ALA | - | - | - | - | - | + | - | - | + | spontaneous at low T |
| FLUO - VAL | + | - | + | + | - | + | - | - | + | nonspontaneous |
| FLUO - LEU | + | - | + | + | - | + | + | - | + | nonspontaneous |
| FLUO - PHE | + | - | + | + | - | + | + | - | + | nonspontaneous |
| FLUO - TYR | + | - | + | + | - | + | + | - | + | nonspontaneous |
| PYR - GLY | + | - | + | - | - | + | - | - | + | nonspontaneous |
| PYR - ALA | - | - | + | - | - | + | - | - | + | nonspontaneous |
| PYR - VAL | + | - | + | + | - | + | + | - | + | nonspontaneous |
| PYR - LEU | + | - | + | + | - | + | + | - | + | nonspontaneous |
| PYR - PHE | + | - | + | + | - | + | + | - | + | nonspontaneous |
| PYR - TYR | + | - | + | + | - | + | + | - | + | nonspontaneous |
| TRI - GLY | - | - | + | - | - | + | - | - | + | nonspontaneous |
| TRI - ALA | - | - | + | - | - | + | - | - | + | nonspontaneous |
| TRI - VAL | + | - | + | + | - | + | + | - | + | nonspontaneous |
| TRI - LEU | + | - | + | + | - | + | + | - | + | nonspontaneous |
| TRI - PHE | + | - | + | + | - | + | + | - | + | nonspontaneous |
| TRI - TYR | + | - | + | + | - | + | + | - | + | nonspontaneous |
| CORO - GLY | + | - | + | - | - | + | - | - | + | nonspontaneous |
| CORO - ALA | - | - | + | - | - | + | - | - | + | nonspontaneous |
| CORO - VAL | + | - | + | + | - | + | + | - | + | nonspontaneous |
| CORO - LEU | + | - | + | + | - | + | + | - | + | nonspontaneous |
| CORO - PHE | + | - | + | + | - | + | + | - | + | nonspontaneous |
| CORO - TYR | + | - | + | + | - | + | + | - | + | nonspontaneous |
Key: “+” values above and “–“ below 0; ΔH = enthalpy of reaction; ΔS = entropy of reaction; ΔG = Gibbs free energy of reaction; T = Temperature. Amino acids: GLY = glycine, ALA = alanine, VAL = valine, LEU = leucine, PHE = phenylalanine, and TYR = tyrosine. PAHs: NAPH = naphthalene, ANTH = anthracene, FLUO = fluoranthene, PYR = pyrene, TRI = triphenylene, and CORO = coronene.
Figure 2Gibbs free energy of reaction ΔG as a function of temperature for the reaction forming glycine (GLY) and alanine (ALA) formation by fluoranthene (FLUO). The gray lines represent amino acid formation (Strecker synthesis) with formaldehyde. (a) glycine formation; (b) alanine formation, (c) valine formation, (d) leucine formation, (e) phenylalanine formation, and (f) tyrosine formation (see reactions and ΔG values in Table S4). The black dashed line indicates the transition to an exergonic reaction (ΔGR < 0).
Figure 3Calculated amino acid concentrations per species for all 36 reactions (Table ) at 150 °C, sorted by amino acid molecule size. The observed trends are similar from 25 to 150 °C. Only reactions leading to the formation of alanine result in a concentration above the analytical detection limit of 1 × 10–8 M (dashed line). NAPH = naphthalene, ANTH = anthracene, FLUO = fluoranthene, PYR = pyrene, TRI = triphenylene, CORO = coronene; GLY = glycine, ALA = alanine, VAL = valine, LEU = leucine, PHE = phenylalanine, TYR = tyrosine
Figure 4Amino acid concentrations as a function of temperature. The concentrations are calculated with 15 ppm of PAH, 106 ppm of CO2, and 19 ppm of NH3 as representative values for carbonaceous chondrites.[60] The indicated detection limit is from the AccQ•Tag method used and serves as a guide as to what would be possible to measure. GLY = glycine, ALA = alanine, VAL = valine, LEU = leucine, PHE = phenylalanine, and TYR = tyrosine.