| Literature DB >> 35328880 |
Yu Fu1, Shaofu Lin1,2, Zhenkai Xu1.
Abstract
The Corona Virus Disease 2019 (COVID-19) is spreading all over the world. Quantitative analysis of the effects of various factors on the spread of the epidemic will help people better understand the transmission characteristics of SARS-CoV-2, thus providing a theoretical basis for governments to develop epidemic prevention and control strategies. This article uses public data sets from The Center for Systems Science and Engineering at Johns Hopkins University (JHU CSSE), Air Quality Open Data Platform, China Meteorological Data Network, and WorldPop website to construct experimental data. The epidemic situation is predicted by Dual-link BiGRU Network, and the relationship between epidemic spread and various feature factors is quantitatively analyzed by the Gauss-Newton iteration Method. The study found that population density has the greatest positive correlation to the spread of the epidemic among the selected feature factors, followed by the number of landing flights. The number of newly diagnosed daily will increase by 1.08% for every 1% of the population density, the number of newly diagnosed daily will increase by 0.98% for every 1% of the number of landing flights. The results of this study show that the control of social distance and population movement has a high priority in epidemic prevention and control strategies, and it can play a very important role in controlling the spread of the epidemic.Entities:
Keywords: COVID-19; Gauss-Newton iteration; neural network; quantitative analysis
Mesh:
Year: 2022 PMID: 35328880 PMCID: PMC8953928 DOI: 10.3390/ijerph19063187
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
Feature display of fusion data set.
| Feature Category | Feature Range |
|---|---|
|
|
|
| Country | Afghanistan, Algeria, Argentina, Australia, Austria, Bahrain, Bangladesh, Belgium, |
| Bolivia, Brazil, Bulgaria, Canada, Chile, China, Colombia, Costa Rica, | |
| Croatia, Cyprus, Denmark, Ecuador, El Salvador, Estonia, Ethiopia, Finland, | |
| France, Georgia, Germany, Ghana, Greece, Guatemala, Guinea, Hungary, | |
| Iceland, India, Indonesia, Iran, Iraq, Ireland, Israel, Italy, | |
| Japan, Jordan, Kazakhstan, Korea, Kuwait, Kyrgyzstan, Laos, Lithuania, | |
| Macedonia, Malaysia, Mali, Mexico, Mongolia, Nepal, Netherlands, New Zealand, | |
| Norway, Pakistan, Peru, Philippines, Poland, Portugal, Romania, Russia, | |
| Saudi Arabia, Serbia, Singapore, South Africa, Spain, Sri Lanka, Sweden, | |
| Switzerland, Tajikistan, Thailand, Turkey, Uganda, Ukraine, United Arab Emirates, | |
| United Kingdom, United States, Uzbekistan | |
| Epidemic | Confirmed, Recovered, Deaths, New |
| Climate | Tmax, Tmin, Wind_speed, Precipitation, DP_F, |
| Pressure, Wind_gust, Altitude, Ab_humidity, Re_humidity | |
| Population | Pop, Density |
| Air quality | NO |
| Flight | Flight_total, Flight_domestic, Flight_international |
Tmax, Tmin, Wind_speed, Precipitation, DP_F, Pressure, Wind_gust, Altitude, Ab_humidity and Re_humidity represent daily maximum temperature, daily minimum temperature, daily average wind speed, daily rainfall, daily dew point temperature, atmospheric pressure, wind gust, altitude, absolute humidity and relative humidity. Pop, Density represent total population, population density. NO, PM, PM, PM, SO, O, CO and AQI, NEPH, UVI, POL, WD represent NO, PM, PM, PM, SO, O, CO content in the air, Air Quality Index(AQI), Suspended particle concentration(from NEPH), UV Index(UVI), Pollution(POL) and Wavelength Dominant(WD). Flight_total, Flight_domestic, and Flight_international represent the total number of flights, the number of domestic flights, and the number of international flights respectively.
Figure 1The network structure diagram of Dual-link BiGRU.
Prediction network parameter settings.
| Layer | Parameter | Value |
|---|---|---|
| 1-D Conv1 | Out channels | 256 |
| Kernel size | 16 | |
| Stride size | 8 | |
| 1-D Conv2 | Out channels | 512 |
| Kernel size | 16 | |
| Stride size | 8 | |
| BiGRU | Hidden size | 100 |
| Number of layers | 5 | |
| 1-D ConvTranspose1 | Out channels | 256 |
| Kernel size | 16 | |
| Stride size | 8 | |
| 1-D ConvTranspose2 | Out channels | 512 |
| Kernel size | 16 | |
| Stride size | 8 | |
| Full Connected layer 1 | In channels | 26 |
| Out channels | 200 | |
| Full Connected layer 2 | In channels | 201 |
| Out channels | 1 |
Comparison of model results.
| Model | 0–5% | 5–10% | 10–15% | 15–20% | >20% | Effective | Invalid |
|---|---|---|---|---|---|---|---|
| Dual-link BiGRU | 2 | 12 | 12 | 22 | 33 | 48 | 33 |
| BiGRU | 0 | 6 | 7 | 12 | 56 | 25 | 56 |
| BiLSTM | 0 | 6 | 8 | 10 | 57 | 24 | 57 |
| CNN | 0 | 7 | 8 | 12 | 54 | 27 | 54 |
Figure 2Display of Dual-link BiGRU prediction results.
Regression equation parameter.
| Confirmed | Recovered | Deaths | Tmax | Tmin | |
|---|---|---|---|---|---|
| Global | 0.06 | 0.17 | −0.28 | −4.52 | −2.97 |
| Wind_speed | Precipitations | DP_F | Pressure | Wind_gust | |
| −16.46 | 84.64 | −4.67 | 2.02 | 73.72 | |
| Altitude | Ab_humidity | Re_humidity | Pop | Density | |
| 6.71 × 10 | −0.17 | −0.112 | 5.8 × 10 | 54,282.5 | |
| NO | PM | PM | PM | SO | |
| 1.95 × 10 | 49.42 | 55.59 | 45.29 | −21.91 | |
| O | CO | AQI | NEPH | UVI | |
| 65.56 | 12.61 | 0.14 | −8.45 | −1.46 | |
| POL | WD | Flight_total | Flight_domestic | Flight_international | |
| 23.68 | 1.91 | 189.547 | 379.995 | 187.5932 | |
|
| Adjusted R Square | ||||
| 293.18 | 0.79 |
Example of initial value of each characteristic coefficient.
| Country | Tmax | Tmin | DP_F | …… | Re_Humidity | Density | Iterations |
|---|---|---|---|---|---|---|---|
| Canada | 0.58 | −0.91 | −0.0075 | …… | −1.67 | 0.34 | 100 |
| China | 2.33 | −11.48 | −18.34 | …… | −12.03 | 0.071 | 100 |
| India | −5.22 | −16.35 | −19.45 | …… | −15.50 | −1.44 | 100 |
| Indonesia | 5.64 | 4.25 | 14.55 | …… | −1.15 | −0.88 | 100 |
| Russia | −23.36 | 28.45 | 40.13 | …… | −2.71 | 0.23 | 100 |
| United Kingdom | −391.08 | 244.49 | 698.08 | …… | 262.37 | −34.67 | 100 |
Quantitative relationship between characteristic factors and daily number of new cases.
| Features | Particle | Influence/% |
|---|---|---|
| Density | +1%/km | 1.0767212 |
| Pop | +1%/km | 1.0441276 |
| Flight_total | +1% | 1.0102873 |
| flight_domestic | +1% | 0.9881371 |
| flight_international | +1% | 0.9455161 |
| UVI | +1% | 0.8142484 |
| PM | +1 | 0.0126328 |
| PM | +1 | 0.0124261 |
| NO | +0.3 | 0.0190209 |
| SO | +0.1 | 0.0208433 |
| PM | +1 | 0.0145565 |
| Wind_speed | +1 m/s in the range of 0–10 m/s | −0.0135183 |
| Preciptation | +1% | −0.0198199 |
| Re_humidity | +1% | −0.0159099 |
| DP_F | +1 °C in the range of 0–50 °C | −0.0150033 |
| Tmin | +1 °C in the range of 0–50 °C | −0.0285928 |
| Tmax | +1 °C in the range of 0–50 °C | −0.0217991 |
The influence >0, indicating that the factor has a positive correlation with the increase in the number of new cases per day. The influence <0, indicating that the factor has a negative correlation with the increase in the number of new cases per day.