Literature DB >> 35325425

In Vitro Method for Synthesis of Large-Scale dsRNA Molecule as a Novel Plant Protection Strategy.

Siddappa Sundaresha1, Aarti Bairwa2, Maharishi Tomar2,3, Ravinder Kumar2, E P Venkatasalam2,4, Vinay Sagar2, Vinay Bhardwaj2, Sanjeev Sharma2.   

Abstract

Double-stranded RNA (dsRNAs) molecules are the precursors and effective triggers of RNAi in most organisms. RNAi can be induced by the direct introduction of dsRNAs in plants, fungi, insects, and nematodes. Until now RNAi is usually established by transformation of the plant with a construct that produces hairpin RNAs. Alternatively, advances in RNA biology demonstrated efficiently the in vitro method of large-scale synthesis of dsRNA molecule. Here we describe the de novo synthesis of dsRNA molecule targeting the specific gene of interest for functional application. Selection of off-target effective siRNA regions, flanking of T7 promoter sequences, T7 polymerase reaction, and maintenance of the stability of dsRNA molecules are the main criteria of this method to obtain pure and effective yield for functional applications. IPTG (isopropyl-β-D-thiogalactopyranoside) induced, T7 express E. coli cells, could be used for large scale synthesis of dsRNA molecule are also described in this method.
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Double-stranded multi-siRNA; Off-targets; RNA; RNAi; T7 Express cell; T7 Promoter

Mesh:

Substances:

Year:  2022        PMID: 35325425     DOI: 10.1007/978-1-0716-1875-2_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  17 in total

Review 1.  RNA interference: biology, mechanism, and applications.

Authors:  Neema Agrawal; P V N Dasaradhi; Asif Mohmmed; Pawan Malhotra; Raj K Bhatnagar; Sunil K Mukherjee
Journal:  Microbiol Mol Biol Rev       Date:  2003-12       Impact factor: 11.056

Review 2.  RNA interference as a new biotechnological tool for the control of virus diseases in plants.

Authors:  Francisco Tenllado; César Llave; José Ramón Díaz-Ruíz
Journal:  Virus Res       Date:  2004-06-01       Impact factor: 3.303

3.  Development of a host-induced RNAi system in the wheat stripe rust fungus Puccinia striiformis f. sp. tritici.

Authors:  Chuntao Yin; James E Jurgenson; Scot H Hulbert
Journal:  Mol Plant Microbe Interact       Date:  2011-05       Impact factor: 4.171

Review 4.  RNA silencing in plants: yesterday, today, and tomorrow.

Authors:  Andrew Eamens; Ming-Bo Wang; Neil A Smith; Peter M Waterhouse
Journal:  Plant Physiol       Date:  2008-06       Impact factor: 8.340

5.  Spray-Induced Gene Silencing: a Powerful Innovative Strategy for Crop Protection.

Authors:  Ming Wang; Hailing Jin
Journal:  Trends Microbiol       Date:  2016-12-04       Impact factor: 17.079

6.  Engineering broad root-knot resistance in transgenic plants by RNAi silencing of a conserved and essential root-knot nematode parasitism gene.

Authors:  Guozhong Huang; Rex Allen; Eric L Davis; Thomas J Baum; Richard S Hussey
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-19       Impact factor: 11.205

7.  HIGS: host-induced gene silencing in the obligate biotrophic fungal pathogen Blumeria graminis.

Authors:  Daniela Nowara; Alexandra Gay; Christophe Lacomme; Jane Shaw; Christopher Ridout; Dimitar Douchkov; Götz Hensel; Jochen Kumlehn; Patrick Schweizer
Journal:  Plant Cell       Date:  2010-09-30       Impact factor: 11.277

8.  Host-induced gene silencing of cytochrome P450 lanosterol C14α-demethylase-encoding genes confers strong resistance to Fusarium species.

Authors:  Aline Koch; Neelendra Kumar; Lennart Weber; Harald Keller; Jafargholi Imani; Karl-Heinz Kogel
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

9.  Production of double-stranded RNA for interference with TMV infection utilizing a bacterial prokaryotic expression system.

Authors:  Guohua Yin; Zhaonan Sun; Nan Liu; Lin Zhang; Yunzhi Song; Changxiang Zhu; Fujiang Wen
Journal:  Appl Microbiol Biotechnol       Date:  2009-03-28       Impact factor: 4.813

10.  Crude extracts of bacterially expressed dsRNA can be used to protect plants against virus infections.

Authors:  Francisco Tenllado; Belén Martínez-García; Marisol Vargas; José Ramón Díaz-Ruíz
Journal:  BMC Biotechnol       Date:  2003-03-20       Impact factor: 2.563

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