Literature DB >> 35324257

Structural basis for potent antibody neutralization of SARS-CoV-2 variants including B.1.1.529.

Tongqing Zhou1, Lingshu Wang1, John Misasi1, John R Mascola1, Nancy J Sullivan1, Peter D Kwong1, Amarendra Pegu1, Yi Zhang1, Darcy R Harris1, Adam S Olia1, Chloe Adrienna Talana1, Eun Sung Yang1, Man Chen1, Misook Choe1, Wei Shi1, I-Ting Teng1, Adrian Creanga1, Claudia Jenkins2, Kwanyee Leung1, Tracy Liu1, Erik-Stephane D Stancofski1, Tyler Stephens2, Baoshan Zhang1, Yaroslav Tsybovsky2, Barney S Graham1.   

Abstract

The rapid spread of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) B.1.1.529 (Omicron) variant and its resistance to neutralization by vaccinee and convalescent sera are driving a search for monoclonal antibodies with potent neutralization. To provide insight into effective neutralization, we determined cryo-electron microscopy structures and evaluated receptor binding domain (RBD) antibodies for their ability to bind and neutralize B.1.1.529. Mutations altered 16% of the B.1.1.529 RBD surface, clustered on an RBD ridge overlapping the angiotensin-converting enzyme 2 (ACE2)-binding surface and reduced binding of most antibodies. Substantial inhibitory activity was retained by select monoclonal antibodies-including A23-58.1, B1-182.1, COV2-2196, S2E12, A19-46.1, S309, and LY-CoV1404-that accommodated these changes and neutralized B.1.1.529. We identified combinations of antibodies with synergistic neutralization. The analysis revealed structural mechanisms for maintenance of potent neutralization against emerging variants.

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Year:  2022        PMID: 35324257      PMCID: PMC9580340          DOI: 10.1126/science.abn8897

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   63.714


  57 in total

1.  cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.

Authors:  Ali Punjani; John L Rubinstein; David J Fleet; Marcus A Brubaker
Journal:  Nat Methods       Date:  2017-02-06       Impact factor: 28.547

2.  LY-CoV1404 (bebtelovimab) potently neutralizes SARS-CoV-2 variants.

Authors:  Kathryn Westendorf; Stefanie Žentelis; Lingshu Wang; Denisa Foster; Peter Vaillancourt; Matthew Wiggin; Erica Lovett; Robin van der Lee; Jörg Hendle; Anna Pustilnik; J Michael Sauder; Lucas Kraft; Yuri Hwang; Robert W Siegel; Jinbiao Chen; Beverly A Heinz; Richard E Higgs; Nicole L Kallewaard; Kevin Jepson; Rodrigo Goya; Maia A Smith; David W Collins; Davide Pellacani; Ping Xiang; Valentine de Puyraimond; Marketa Ricicova; Lindsay Devorkin; Caitlin Pritchard; Aoise O'Neill; Kush Dalal; Pankaj Panwar; Harveer Dhupar; Fabian A Garces; Courtney A Cohen; John M Dye; Kathleen E Huie; Catherine V Badger; Darwyn Kobasa; Jonathan Audet; Joshua J Freitas; Saleema Hassanali; Ina Hughes; Luis Munoz; Holly C Palma; Bharathi Ramamurthy; Robert W Cross; Thomas W Geisbert; Vineet Menachery; Kumari Lokugamage; Viktoriya Borisevich; Iliana Lanz; Lisa Anderson; Payal Sipahimalani; Kizzmekia S Corbett; Eun Sung Yang; Yi Zhang; Wei Shi; Tongqing Zhou; Misook Choe; John Misasi; Peter D Kwong; Nancy J Sullivan; Barney S Graham; Tara L Fernandez; Carl L Hansen; Ester Falconer; John R Mascola; Bryan E Jones; Bryan C Barnhart
Journal:  Cell Rep       Date:  2022-04-25       Impact factor: 9.995

3.  The neutralizing antibody, LY-CoV555, protects against SARS-CoV-2 infection in nonhuman primates.

Authors:  Bryan E Jones; Patricia L Brown-Augsburger; Kizzmekia S Corbett; Kathryn Westendorf; Julian Davies; Thomas P Cujec; Christopher M Wiethoff; Jamie L Blackbourne; Beverly A Heinz; Denisa Foster; Richard E Higgs; Deepa Balasubramaniam; Lingshu Wang; Yi Zhang; Eun Sung Yang; Roza Bidshahri; Lucas Kraft; Yuri Hwang; Stefanie Žentelis; Kevin R Jepson; Rodrigo Goya; Maia A Smith; David W Collins; Samuel J Hinshaw; Sean A Tycho; Davide Pellacani; Ping Xiang; Krithika Muthuraman; Solmaz Sobhanifar; Marissa H Piper; Franz J Triana; Jorg Hendle; Anna Pustilnik; Andrew C Adams; Shawn J Berens; Ralph S Baric; David R Martinez; Robert W Cross; Thomas W Geisbert; Viktoriya Borisevich; Olubukola Abiona; Hayley M Belli; Maren de Vries; Adil Mohamed; Meike Dittmann; Marie I Samanovic; Mark J Mulligan; Jory A Goldsmith; Ching-Lin Hsieh; Nicole V Johnson; Daniel Wrapp; Jason S McLellan; Bryan C Barnhart; Barney S Graham; John R Mascola; Carl L Hansen; Ester Falconer
Journal:  Sci Transl Med       Date:  2021-04-05       Impact factor: 19.319

4.  Cooperativity Enables Non-neutralizing Antibodies to Neutralize Ebolavirus.

Authors:  Katie A Howell; Jennifer M Brannan; Christopher Bryan; Andrew McNeal; Edgar Davidson; Hannah L Turner; Hong Vu; Sergey Shulenin; Shihua He; Ana Kuehne; Andrew S Herbert; Xiangguo Qiu; Benjamin J Doranz; Frederick W Holtsberg; Andrew B Ward; John M Dye; M Javad Aman
Journal:  Cell Rep       Date:  2017-04-11       Impact factor: 9.423

5.  A new coronavirus associated with human respiratory disease in China.

Authors:  Fan Wu; Su Zhao; Bin Yu; Yan-Mei Chen; Wen Wang; Zhi-Gang Song; Yi Hu; Zhao-Wu Tao; Jun-Hua Tian; Yuan-Yuan Pei; Ming-Li Yuan; Yu-Ling Zhang; Fa-Hui Dai; Yi Liu; Qi-Min Wang; Jiao-Jiao Zheng; Lin Xu; Edward C Holmes; Yong-Zhen Zhang
Journal:  Nature       Date:  2020-02-03       Impact factor: 49.962

6.  Structural basis for continued antibody evasion by the SARS-CoV-2 receptor binding domain.

Authors:  Katherine G Nabel; Sarah A Clark; Sundaresh Shankar; Junhua Pan; Lars E Clark; Pan Yang; Adrian Coscia; Lindsay G A McKay; Haley H Varnum; Vesna Brusic; Nicole V Tolan; Guohai Zhou; Michaël Desjardins; Sarah E Turbett; Sanjat Kanjilal; Amy C Sherman; Anand Dighe; Regina C LaRocque; Edward T Ryan; Casey Tylek; Joel F Cohen-Solal; Anhdao T Darcy; Davide Tavella; Anca Clabbers; Yao Fan; Anthony Griffiths; Ivan R Correia; Jane Seagal; Lindsey R Baden; Richelle C Charles; Jonathan Abraham
Journal:  Science       Date:  2022-01-21       Impact factor: 63.714

7.  Studies in humanized mice and convalescent humans yield a SARS-CoV-2 antibody cocktail.

Authors:  Johanna Hansen; Alina Baum; Kristen E Pascal; Vincenzo Russo; Stephanie Giordano; Elzbieta Wloga; Benjamin O Fulton; Ying Yan; Katrina Koon; Krunal Patel; Kyung Min Chung; Aynur Hermann; Erica Ullman; Jonathan Cruz; Ashique Rafique; Tammy Huang; Jeanette Fairhurst; Christen Libertiny; Marine Malbec; Wen-Yi Lee; Richard Welsh; Glen Farr; Seth Pennington; Dipali Deshpande; Jemmie Cheng; Anke Watty; Pascal Bouffard; Robert Babb; Natasha Levenkova; Calvin Chen; Bojie Zhang; Annabel Romero Hernandez; Kei Saotome; Yi Zhou; Matthew Franklin; Sumathi Sivapalasingam; David Chien Lye; Stuart Weston; James Logue; Robert Haupt; Matthew Frieman; Gang Chen; William Olson; Andrew J Murphy; Neil Stahl; George D Yancopoulos; Christos A Kyratsous
Journal:  Science       Date:  2020-06-15       Impact factor: 47.728

8.  Structure-Based Design with Tag-Based Purification and In-Process Biotinylation Enable Streamlined Development of SARS-CoV-2 Spike Molecular Probes.

Authors:  Tongqing Zhou; I-Ting Teng; Adam S Olia; Gabriele Cerutti; Jason Gorman; Alexandra Nazzari; Wei Shi; Yaroslav Tsybovsky; Lingshu Wang; Shuishu Wang; Baoshan Zhang; Yi Zhang; Phinikoula S Katsamba; Yuliya Petrova; Bailey B Banach; Ahmed S Fahad; Lihong Liu; Sheila N Lopez Acevedo; Bharat Madan; Matheus Oliveira de Souza; Xiaoli Pan; Pengfei Wang; Jacy R Wolfe; Michael Yin; David D Ho; Emily Phung; Anthony DiPiazza; Lauren A Chang; Olubukola M Abiona; Kizzmekia S Corbett; Brandon J DeKosky; Barney S Graham; John R Mascola; John Misasi; Tracy Ruckwardt; Nancy J Sullivan; Lawrence Shapiro; Peter D Kwong
Journal:  Cell Rep       Date:  2020-10-12       Impact factor: 9.423

9.  Ultrapotent human antibodies protect against SARS-CoV-2 challenge via multiple mechanisms.

Authors:  M Alejandra Tortorici; Martina Beltramello; Florian A Lempp; Dora Pinto; Ha V Dang; Laura E Rosen; Matthew McCallum; John Bowen; Andrea Minola; Stefano Jaconi; Fabrizia Zatta; Anna De Marco; Barbara Guarino; Siro Bianchi; Elvin J Lauron; Heather Tucker; Jiayi Zhou; Alessia Peter; Colin Havenar-Daughton; Jason A Wojcechowskyj; James Brett Case; Rita E Chen; Hannah Kaiser; Martin Montiel-Ruiz; Marcel Meury; Nadine Czudnochowski; Roberto Spreafico; Josh Dillen; Cindy Ng; Nicole Sprugasci; Katja Culap; Fabio Benigni; Rana Abdelnabi; Shi-Yan Caroline Foo; Michael A Schmid; Elisabetta Cameroni; Agostino Riva; Arianna Gabrieli; Massimo Galli; Matteo S Pizzuto; Johan Neyts; Michael S Diamond; Herbert W Virgin; Gyorgy Snell; Davide Corti; Katja Fink; David Veesler
Journal:  Science       Date:  2020-09-24       Impact factor: 47.728

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  31 in total

Review 1.  The humoral response and antibodies against SARS-CoV-2 infection.

Authors:  Hai Qi; Linqi Zhang; Bo Liu; Xinquan Wang
Journal:  Nat Immunol       Date:  2022-06-27       Impact factor: 31.250

2.  Structural basis of a two-antibody cocktail exhibiting highly potent and broadly neutralizing activities against SARS-CoV-2 variants including diverse Omicron sublineages.

Authors:  Xiaoman Li; Yongbing Pan; Qiangling Yin; Zejun Wang; Sisi Shan; Laixing Zhang; Jinfang Yu; Yuanyuan Qu; Lina Sun; Fang Gui; Jia Lu; Zhaofei Jing; Wei Wu; Tao Huang; Xuanling Shi; Jiandong Li; Xinguo Li; Dexin Li; Shiwen Wang; Maojun Yang; Linqi Zhang; Kai Duan; Mifang Liang; Xiaoming Yang; Xinquan Wang
Journal:  Cell Discov       Date:  2022-09-08       Impact factor: 38.079

Review 3.  Origin, virological features, immune evasion and intervention of SARS-CoV-2 Omicron sublineages.

Authors:  Shuai Xia; Lijue Wang; Yun Zhu; Lu Lu; Shibo Jiang
Journal:  Signal Transduct Target Ther       Date:  2022-07-19

4.  Cryo-EM structures of SARS-CoV-2 Omicron BA.2 spike.

Authors:  Victoria Stalls; Jared Lindenberger; Sophie M-C Gobeil; Rory Henderson; Rob Parks; Maggie Barr; Margaret Deyton; Mitchell Martin; Katarzyna Janowska; Xiao Huang; Aaron May; Micah Speakman; Esther Beaudoin; Bryan Kraft; Xiaozhi Lu; Robert J Edwards; Amanda Eaton; David C Montefiori; Wilton B Williams; Kevin O Saunders; Kevin Wiehe; Barton F Haynes; Priyamvada Acharya
Journal:  Cell Rep       Date:  2022-06-08       Impact factor: 9.995

5.  Neutralizing antibodies and their cocktails against SARS-CoV-2 Omicron and other circulating variants.

Authors:  Yang Yang; Lanying Du
Journal:  Cell Mol Immunol       Date:  2022-06-24       Impact factor: 22.096

6.  Broadly Neutralizing Antibodies to SARS-CoV-2 Provide Novel Insights Into the Neutralization of Variants and Other Human Coronaviruses.

Authors:  Prashant Bajpai; Vanshika Singh; Anmol Chandele; Sanjeev Kumar
Journal:  Front Cell Infect Microbiol       Date:  2022-06-16       Impact factor: 6.073

7.  Intramuscular AZD7442 (Tixagevimab-Cilgavimab) for Prevention of Covid-19.

Authors:  Myron J Levin; Andrew Ustianowski; Stéphane De Wit; Odile Launay; Miles Avila; Alison Templeton; Yuan Yuan; Seth Seegobin; Adam Ellery; Dennis J Levinson; Philip Ambery; Rosalinda H Arends; Rohini Beavon; Kanika Dey; Pedro Garbes; Elizabeth J Kelly; Gavin C K W Koh; Karen A Near; Kelly W Padilla; Konstantina Psachoulia; Audrey Sharbaugh; Katie Streicher; Menelas N Pangalos; Mark T Esser
Journal:  N Engl J Med       Date:  2022-04-20       Impact factor: 176.079

8.  Structural diversity of the SARS-CoV-2 Omicron spike.

Authors:  Sophie M-C Gobeil; Rory Henderson; Victoria Stalls; Katarzyna Janowska; Xiao Huang; Aaron May; Micah Speakman; Esther Beaudoin; Kartik Manne; Dapeng Li; Rob Parks; Maggie Barr; Margaret Deyton; Mitchell Martin; Katayoun Mansouri; Robert J Edwards; Amanda Eaton; David C Montefiori; Gregory D Sempowski; Kevin O Saunders; Kevin Wiehe; Wilton Williams; Bette Korber; Barton F Haynes; Priyamvada Acharya
Journal:  Mol Cell       Date:  2022-03-25       Impact factor: 19.328

9.  Convergent epitope specificities, V gene usage and public clones elicited by primary exposure to SARS-CoV-2 variants.

Authors:  Noemia S Lima; Maryam Mukhamedova; Timothy S Johnston; Danielle A Wagner; Amy R Henry; Lingshu Wang; Eun Sung Yang; Yi Zhang; Kevina Birungi; Walker P Black; Sijy O'Dell; Stephen D Schmidt; Damee Moon; Cynthia G Lorang; Bingchun Zhao; Man Chen; Kristin L Boswell; Jesmine Roberts-Torres; Rachel L Davis; Lowrey Peyton; Sandeep R Narpala; Sarah O'Connell; Jennifer Wang; Alexander Schrager; Chloe Adrienna Talana; Kwanyee Leung; Wei Shi; Rawan Khashab; Asaf Biber; Tal Zilberman; Joshua Rhein; Sara Vetter; Afeefa Ahmed; Laura Novik; Alicia Widge; Ingelise Gordon; Mercy Guech; I-Ting Teng; Emily Phung; Tracy J Ruckwardt; Amarendra Pegu; John Misasi; Nicole A Doria-Rose; Martin Gaudinski; Richard A Koup; Peter D Kwong; Adrian B McDermott; Sharon Amit; Timothy W Schacker; Itzchak Levy; John R Mascola; Nancy J Sullivan; Chaim A Schramm; Daniel C Douek
Journal:  bioRxiv       Date:  2022-03-29

10.  A broad and potent neutralization epitope in SARS-related coronaviruses.

Authors:  Meng Yuan; Xueyong Zhu; Wan-Ting He; Panpan Zhou; Chengzi I Kaku; Tazio Capozzola; Connie Y Zhu; Xinye Yu; Hejun Liu; Wenli Yu; Yuanzi Hua; Henry Tien; Linghang Peng; Ge Song; Christopher A Cottrell; William R Schief; David Nemazee; Laura M Walker; Raiees Andrabi; Dennis R Burton; Ian A Wilson
Journal:  bioRxiv       Date:  2022-03-14
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