Literature DB >> 35312355

The photobiology of the human circadian clock.

Robin A Schoonderwoerd1, Mischa de Rover1,2, Jan A M Janse1, Lydiane Hirschler3, Channa R Willemse1, Leonie Scholten1, Ilse Klop1, Sander van Berloo4, Matthias J P van Osch3, Dick F Swaab5, Johanna H Meijer1.   

Abstract

SignificanceThe function of our biological clock is dependent on environmental light. Rodent studies have shown that there are multiple colors that affect the clock, but indirect measures in humans suggest blue light is key. We performed functional MRI studies in human subjects with unprecedented spatial resolution to investigate color sensitivity of our clock. Here, we show that narrowband blue, green, and orange light were all effective in changing neuronal activity of the clock. While the clock of nocturnal rodents is excited by light, the human clock responds with a decrease in neuronal activity as indicated by a negative BOLD response. The sensitivity of the clock to multiple colors should be integrated in light therapy aimed to strengthen our 24-h rhythms.

Entities:  

Keywords:  cones; fMRI; melanopsin; photoreceptors; suprachiasmatic nucleus

Mesh:

Year:  2022        PMID: 35312355      PMCID: PMC9060497          DOI: 10.1073/pnas.2118803119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


Due to the Earth’s rotation around its axis, many organisms developed an internal clock to anticipate the predictable changes in the environment that occur every 24 h, including the daily light–dark cycle. In mammals, this clock is located in the suprachiasmatic nucleus (SCN), located in the hypothalamus directly above the optic chiasm (1, 2). The SCN receives information from the retina regarding ambient light levels via intrinsically photosensitive retinal ganglion cells (ipRGCs), thus synchronizing its internal clock to the external light–dark cycle. ipRGCs contain the photopigment melanopsin, which is maximally sensitive to blue light, with a peak response to 480-nm light (3, 4). In addition, ipRGCs also receive input from rod cells and cone cells (5–7). The three cone cell subtypes in the human retina respond maximally to 420-nm, 534-nm, and 563-nm light, while rod cells respond maximally to 498-nm light (8). In rodents, input from cone cells renders the SCN sensitive to a broad spectrum of wavelengths (9), while rod cells mediate the SCN’s sensitivity to low-intensity light (10, 11). Recently, these findings in rodents were proposed to translate to humans (12), suggesting that the human clock is not only sensitive to blue light, but may also be sensitive to other colors. In humans, circadian responses to light are generally measured indirectly (e.g., by measuring melatonin levels or 24-h behavioral rhythms). These indirect measures revealed that circadian responses to light in humans are most sensitive to blue light (13–16); however, green light has also been found to contribute to circadian phase shifting and changes in melatonin to a larger extent than would have been predicted based solely on the melanopsin response, suggesting that rods and/or cones may also provide functional input to the circadian system in humans (17). Despite this indirect evidence suggesting that several colors can affect the human circadian clock, this has never been measured directly due to technical limitations. Thus, current guidelines regarding the use of artificial light are based solely on the clock’s sensitivity to blue light. For example, blue light is usually filtered out in electronic screens during the night (18, 19), and blue-enriched light is used by night shift workers to optimize their body rhythm for achieving maximum performance (20–22). The ability to directly image the human SCN in vivo has been severely limited due to its small size and the relatively low spatial resolution provided by medical imaging devices. Previous functional MRI (fMRI) studies using 3-Tesla (3T) scanners were restricted to recording the “suprachiasmatic area,” which encompasses a large part of the hypothalamus and thus includes many other potentially light-sensitive nuclei (23–25). To overcome this limitation, we used a 7T MRI scanner, which can provide images with sufficiently high spatial resolution to image small brain nuclei (26) such as the SCN. Here, we applied colored light stimuli to healthy volunteers using a custom-designed MRI-compatible light-emitting diode (LED) device designed to stimulate specific photoreceptors while measuring SCN activity using fMRI. Using analytical approaches, we then identified the SCN’s response, the smallest brain nucleus that has so far been imaged. We found that the human SCN responds to a broad range of wavelengths (i.e., blue, green and orange light). Surprisingly, we also found that the blood oxygen level–dependent (BOLD) fMRI signal at the SCN is actually suppressed—not activated—by light.

Results

First, we developed an MRI-compatible LED device designed to apply specific wavelengths of light to the participants’ eyes while measuring brain activity using fMRI (Fig. 1 ). The LED device was attached to the inside of the head coil, providing sufficiently high light intensity and whole-field retinal illumination, which is important given that melanopsin-expressing cells are present throughout the retina (27). Moreover, the LED device was designed using nonferromagnetic materials and is therefore unaffected by high-frequency radio pulses and the strong magnetic field produced by the MRI scanner (Materials and Methods).
Fig. 1.

The fMRI-compatible LED device, light protocol, and SCN localization. (A and B) A set of MRI-compatible light-emitting glasses. (C) LEDs were used to stimulate the indicated human photoreceptors close to their known peak absorption spectra; L-cone, M-cone, and S-cone refer to long-, medium-, and short-wavelength cone cells, respectively. (D) Light protocol: 20-s light pulses followed by 30-s periods of darkness. (E) Vasopressin-stained sections from human postmortem brains. OX, optic chiasm; 3V, third ventricle. (F) SCN is indicated by the dashed yellow rectangle in a high-resolution T1-weighted image. CW, circle of Willis. (G and H) Improvement of chiasm alignment (within yellow rectangles) following manual registration.

The fMRI-compatible LED device, light protocol, and SCN localization. (A and B) A set of MRI-compatible light-emitting glasses. (C) LEDs were used to stimulate the indicated human photoreceptors close to their known peak absorption spectra; L-cone, M-cone, and S-cone refer to long-, medium-, and short-wavelength cone cells, respectively. (D) Light protocol: 20-s light pulses followed by 30-s periods of darkness. (E) Vasopressin-stained sections from human postmortem brains. OX, optic chiasm; 3V, third ventricle. (F) SCN is indicated by the dashed yellow rectangle in a high-resolution T1-weighted image. CW, circle of Willis. (G and H) Improvement of chiasm alignment (within yellow rectangles) following manual registration. To evaluate the output performance of the LED device, we first measured the individual emission spectra of the four sets of LEDs. Each set of LEDs emitted light at the expected wavelength, with minimum overlap with the absorption spectra of other receptors (Fig. 1). Next, we configured the protocol for the LED device to deliver 15.2 log photons/cm2/s via each individual LED set using the timing shown in Fig. 1 (see Materials and Methods for details). For functional imaging, the location of both SCN was determined by comparing each participant’s anatomical images with reference images based on immunocytochemical staining of vasopressin in sections prepared from human postmortem brains (Fig. 1). Because the SCN are located in close proximity to both the large blood vessels of the circle of Willis and the third ventricle (Fig. 1 ), we used the Elastix registration toolbox (https://elastix.lumc.nl/) to correct the functional data for motion, and we used independent component analysis-automatic removal of motion artifacts (ICA-AROMA) for de-noising of any breathing and heart rate‒associated artifacts. To register the functional data slices to the standard MNI152 template, automatic registration focusing on the whole-brain alignment was insufficient to visualize the SCN and optic chiasm in the mean plot (Fig. 1); therefore, we performed manual registration focusing on the SCN region and only in the manually aligned averages of the functional data, the outline of the optic chiasm emerged in the mean plot (Fig. 1). For our study, all participants were male, as postmortem studies indicate that the SCN in men is spherical, compared to the more elongated SCN in women (28), thus increasing our ability to capture the SCN signal, given the shape and size of the voxels. All 12 participants were healthy male adults (30 ± 12 y of age; range, 22–58 y), with an MSFsc (midsleep time on free days, corrected for sleep debt) value of 04:32 ± 01:30 relative to midnight, thus there was no overrepresentation of extreme morning or evening types. All scans were performed between 22:00 (10:00 PM) and 23:00 (11:00 PM), as previous studies suggest that light elicits the strongest SCN response at night (23, 29). To characterize the light-induced response in the SCN, MRI masks were drawn a priori covering both the left and right SCN based exclusively on anatomical localization (Fig. 2) by comparing the anatomical scans with the immunocytochemical staining shown in Fig. 1. Time series data were extracted, and the BOLD signal was averaged for light stimuli when all four colors were combined (i.e., the responses elicited by all 36 light pulses were averaged). As a positive control, masks of equal size were also drawn in the visual cortex V1 region (Fig. 2), and time series data were extracted to generate the average waveform (Fig. 2). As a negative control, masks of the same size were also drawn in a region containing cerebrospinal fluid (CSF) (Fig. 2 and ). All 12 participants were included in the SCN and CSF analyses, whereas only nine participants were included in the V1 analysis, as the functional scan did not cover the masked areas of V1 in three participants. The light-induced responses were quantified by averaging the percent change in the BOLD signal for the last 15 s of each 20-s light pulse and are summarized in Fig. 2. We found that on average, all 36 light pulses significantly reduced the BOLD signal in the SCN by 0.38 ± 0.10% (P = 0.003) and significantly increased the BOLD signal in the V1 region of the visual cortex by 1.45 ± 0.27% (P < 0.001); as expected, the light pulses had no effect on the BOLD signal measured in the CSF (P = 0.84). A mixed-effects model showed significant differences between the three regions (F[1.443, 13.71] = 39.24; P < 0.0001), and Šidák’s multiple comparisons test showed a significant difference in the responses measured between the SCN and CSF (P = 0.039).
Fig. 2.

Light causes a suppression in BOLD signal in the SCN. Masks (3 × 4 × 3 mm) were drawn on the standard MNI152 template (yellow shaded squares) for the (A) SCN, (B) V1, and (C) CSF. (D–F) Average time course of the change in BOLD signal measured in the SCN (D), visual cortex region V1 (E), and CSF (F) in all 12 participants. Darkness was indicated by the gray background. (G) Summary of the average change in the BOLD signal measured in the SCN, VI region, and CSF in response to all 36 light pulses. **P < 0.01, ***P < 0.001; ns, not significant (one-sample t test). In this and subsequent figures, all summary data are presented as the mean ± SEM.

Light causes a suppression in BOLD signal in the SCN. Masks (3 × 4 × 3 mm) were drawn on the standard MNI152 template (yellow shaded squares) for the (A) SCN, (B) V1, and (C) CSF. (D–F) Average time course of the change in BOLD signal measured in the SCN (D), visual cortex region V1 (E), and CSF (F) in all 12 participants. Darkness was indicated by the gray background. (G) Summary of the average change in the BOLD signal measured in the SCN, VI region, and CSF in response to all 36 light pulses. **P < 0.01, ***P < 0.001; ns, not significant (one-sample t test). In this and subsequent figures, all summary data are presented as the mean ± SEM. We then used a general linear model (GLM) to perform a voxel-based analysis of the responses to individual colors and found voxels showing a significant response (P < 0.01, uncorrected) at the location of the SCN, bilaterally above the optic chiasm (Fig. 3). Interestingly, although violet light did not cause a significant change in the BOLD signal in the SCN (Fig. 3 ), blue light (Fig. 3 ), green light (Fig. 3 ), and orange light (Fig. 3 ) each induced a significant suppression in the BOLD signal (Fig. 3). Between colors, no significant differences were observed in the magnitude of the response (repeated measures one-way ANOVA; F = 2.292; P = 0.102). All voxels at the SCN location had a z-stat value of <−2.3, indicating that these light-induced responses in the SCN reflect a suppression in neuronal activity.
Fig. 3.

The SCN responds to several wavelengths in addition to blue light. (A–D) Light-responsive voxels showing the BOLD signal measured in the SCN of all 12 participants in response to violet (A), blue (B), green (C), and orange (D) light (P < 0.01 uncorrected for illustration). Background is the MNI152 standard brain (1 mm isotropic resolution). (E–H) Average time course of the change in BOLD signal measured in the SCN. Percent change in BOLD signal following violet (E), blue (F), green (G), and orange (H) light. (I) Average light responses and significances. Data in the first bar (in black) were reproduced from Fig. 2 for comparison purposes. *P < 0.05, **P < 0.01, ***P < 0.001; ns, not significant (one-sample t test). A one-way repeated measures ANOVA revealed no significant differences in the response between colors (F[2,764, 30,41] = 2,292; P = 0.102).

The SCN responds to several wavelengths in addition to blue light. (A–D) Light-responsive voxels showing the BOLD signal measured in the SCN of all 12 participants in response to violet (A), blue (B), green (C), and orange (D) light (P < 0.01 uncorrected for illustration). Background is the MNI152 standard brain (1 mm isotropic resolution). (E–H) Average time course of the change in BOLD signal measured in the SCN. Percent change in BOLD signal following violet (E), blue (F), green (G), and orange (H) light. (I) Average light responses and significances. Data in the first bar (in black) were reproduced from Fig. 2 for comparison purposes. *P < 0.05, **P < 0.01, ***P < 0.001; ns, not significant (one-sample t test). A one-way repeated measures ANOVA revealed no significant differences in the response between colors (F[2,764, 30,41] = 2,292; P = 0.102). We then performed the same analysis in the V1 region of the visual cortex as a positive control (n = 9 participants) (Fig. 4). As expected, all four individual colors induced a significant increase (P < 0.01, uncorrected) in the BOLD signal (Fig. 4).
Fig. 4.

All four colors induce a response in the visual cortex. (A–D) Light-responsive voxels showing the BOLD signal measured in the V1 region of 9 participants in response to violet (A), blue (B), green (C), and orange (D) light (P < 0.01 uncorrected for illustration). Background is the MNI152 standard brain (1 mm isotropic resolution). (E–H) Average time course of the change in BOLD signal measured in the V1 region. Percent change in BOLD signal following violet (E), blue (F), green (G), and orange (H) light. (I) Summary of the average change in the BOLD signal measured in the V1 region. The data in the first bar were reproduced from Fig. 2 for comparison purposes. **P < 0.01 and ***P < 0.001 (one-sample t test). One-way repeated measures ANOVA shows no significant difference between colors (F[1.410, 11.28] = 3.665; P = 0.071).

All four colors induce a response in the visual cortex. (A–D) Light-responsive voxels showing the BOLD signal measured in the V1 region of 9 participants in response to violet (A), blue (B), green (C), and orange (D) light (P < 0.01 uncorrected for illustration). Background is the MNI152 standard brain (1 mm isotropic resolution). (E–H) Average time course of the change in BOLD signal measured in the V1 region. Percent change in BOLD signal following violet (E), blue (F), green (G), and orange (H) light. (I) Summary of the average change in the BOLD signal measured in the V1 region. The data in the first bar were reproduced from Fig. 2 for comparison purposes. **P < 0.01 and ***P < 0.001 (one-sample t test). One-way repeated measures ANOVA shows no significant difference between colors (F[1.410, 11.28] = 3.665; P = 0.071).

Discussion

In humans, a properly functioning circadian clock is essential for maintaining health; however, our modern society can alter our circadian clock’s function, for example, due to our excessive use of artificial light at night, long flights that span multiple time zones, and shift work (particularly rotating shift work). To preserve clock function, we should maximize our exposure to light during the day and minimize the harmful effects of artificial light during the night; thus, strategies designed to optimize our exposure to light—particularly light at the “correct” wavelength—are needed. As a major step toward developing such a strategy, we created an MRI-compatible LED device and directly measured activity in the participants’ SCN using state-of-the-art neuroimaging techniques while delivering specific colors of light. We found that the SCN responded negatively to blue light—and, surprisingly, to green and orange light as well—whereas violet light had no measurable effect. Given that violet light elicited the weakest effect in the visual cortex among all four colors, its lack of a significant effect in the SCN may reflect the partial filtering of short-wavelength light in the eye by the lens and the macular pigment (30). The differential contribution of specific photoreceptors to image-forming vision in the visual cortex versus non-image-forming vision in the SCN is reflected by the difference in responses to blue light between these two brain regions; specifically, we found that blue light elicited the strongest response in the SCN, while in the visual cortex this was not the case. This relatively strong response to blue light in the SCN is likely due to melanopsin-mediated input (4). Furthermore, we found that orange light elicited similar responses as green light in the visual cortex and the SCN, providing strong evidence that the activity of L-cone cells in the human retina contributes to the SCN’s response to external light. Our study adds to the growing body of evidence, mostly based on rodent studies that colors other than blue, and receptors other than melanopsin, contribute to the SCN light response (9, 31–34). We found that blue, green, and orange light induced a negative change in the BOLD signal measured in the human SCN. These results are in contrast to a previous fMRI study by Vimal et al. (23), in which the authors observed a positive change in the BOLD signal in response to light stimuli. It is important to note, however, that the authors analyzed a larger volume covering more than just the SCN, with lower spatial resolution (3.44 × 3.44 × 1.9 mm, compared to 1.25 × 1.25 × 1.65 mm in our study, i.e., more than a factor of 8 smaller voxel volume). More recently, McGlashan et al. (25) measured the effect of light stimuli on the BOLD signal in the suprachiasmatic area and found that half of the measurements indicated a positive change in the BOLD signal, while the other half indicated a negative response; however, in their study the suprachiasmatic area encompassed the entire hypothalamus, which limited the interpretation of their results. The negative change in the BOLD signal in the SCN in response to light likely reflects an inhibitory effect of light input on neuronal activity (35, 36), as recently reported for the habenula (37) and amygdala (38). Hypothalamic inhibition in the suprachiasmatic area in response to bright white light at night has been shown using positron emission tomography (39). The deactivated area in that study covered not only the SCN, but a large hypothalamic area, also including the subparaventricular zone and ventro–lateral preoptic area. In our study, the spatial resolution was sufficient to selectively measure light responses in the SCN. Both in nocturnal and diurnal species, a proportion of the SCN neurons is inhibited rather than excited by light (40–42). In nocturnal species, the vast majority of neurons are light-excited, leading to excitatory responses at the population-level (43). In the diurnal degus and squirrel, however, the proportion of light-inhibited neurons exceeded the light-suppressed neurons (41, 42). The function of light-inhibitions in the SCN has never been questioned, and has not been included in current models of photic entrainment. A recent study showed that the mouse retinohypothalamic tract (RHT) not only contains glutamate (44), but also GABA as a neurotransmitter (45). Possibly, the RHT of diurnal species contains a larger proportion of GABAergic fibers compared to nocturnal species. Importantly, the fMRI measures reflect a response at the population level. On a single-cell level, light-excited and light-suppressed neurons will coexist. We hypothesize that the light-activated responses in both nocturnal and diurnal rodents underlie phase-shifting by light. Obviously, light-induced phase shifts are smaller in diurnal compared with nocturnal animals (46). Future studies may reveal whether light-induced inhibitions support neuronal synchrony. Indeed, in day-active animals, light helps synchronization, while in nocturnal animals light desynchronizes the network (46, 47). Mechanistic studies will be required in order to further dissect differences between diurnal and nocturnal species with respect to processing light information. In summary, we report evidence that the circadian clock in humans receives multiple spectral inputs. This finding suggests that strategies designed to minimize the harmful effects of jet lag, rotating shift work, and other disruptions to our circadian rhythms should not exclusively focus on controlling blue light exposure, as other colors also affect the circadian clock. Moreover, our findings lead to a proposition that the clock of diurnal species is inhibited by light and thus that different neuronal circuitry within the SCN separates nocturnal and diurnal species. Our increasing knowledge regarding the effects of light on the circadian clock will definitely help responsible use of light in order to improve our general health and well-being.

Materials and Methods

Participants.

This study was approved by the medical ethics committee at Leiden University Medical Center, and all participants provided written informed consent. To be included in the study, the participants: (i) were not color-blind, (ii) had never had cataract surgery, (iii) were free from internal metallic fragments or implants, (iv) had no history of photosensitivity or seizure activity, (v) had no history of sleep disorders, and (vi) did not travel between time zones within 7 d prior to the scan. All 12 participants were males 30 ± 12 y of age (range, 22–58 y). The Munich Chronotype Questionnaire was used to determine the participant’s midpoint of sleep (MSFsc) (48). All data were collected from March 2019 through March 2020.

Procedure.

Participants were scanned between 10:00 PM and 11:00 PM. During the scan, the participants were instructed to move as little as possible, gaze upward without fixating on a certain point, and allow their eyes be exposed to the light. Both heart rate and breathing were measured continuously throughout the scanning session.

Light Exposure.

Light was presented via a custom-made light-emitting device (Fig. 1 and ), which was attached to the head coil above the participant’s eyes in order to cover the participant’s field of view (Fig. 1). This device was programmed to emit monochromatic violet (λmax = 405 nm), blue (λmax = 470 nm), green (λmax = 515 nm), or orange (λmax = 590 nm) light via four sets of LEDs (Fig. 1). A light intensity of 15.2 log photons/cm2/s was used for all colors, which is sufficient to stimulate rods, cones, and melanopsin (11), but not anywhere near outdoor daytime intensities. The device’s aluminum controller box serves as a Faraday cage and receives input from an optical link with the computer located in the MRI control room. This controller box contains a trigger function in order to synchronize the LED’s protocol with the MRI sequence. Finally, any buildup of voltage in the LED device was prevented by including transient voltage suppressors, decoupling capacitors, current-limiting resistors, and pull-up resistors, and by shielding and twisting all wires (). The LED device was safety-approved in a Failure Mode and Effects Analysis. Non-dark-adapted participants were presented with 36 20-s pulses of monochromatic light (9 pulses of each color) delivered in pseudorandom order in a block design; between each pulse, the participants were presented with 30 s of darkness. Each light pulse included a gradual increase in intensity to avoid inducing a startle response (Fig. 1). The light stimuli were synchronized to the MRI sequence.

fMRI Data Acquisition.

Functional and structural images were acquired using a 7T MR scanner with a 32-channel head coil (Philips, Eindhoven, the Netherlands). High-resolution T1-weighted scans were acquired using the following parameters: field-of-view = 246 × 246 × 174 mm, flip angle = 7°, number of slices = 249, slice thickness = 0.70 mm, interslice gap = 0 mm, in-plane voxel resolution = 0.64 × 0.64 mm, echo time (TE) = 2.1 ms, repetition time = 4.6 ms, and acquisition time = 506 s Functional images were acquired using a T2-weighted BOLD fMRI sequence, with single-shot echo-planar imaging (EPI) and a repetition time of 641 ms. This temporal resolution is essential for reducing physiological noise using ICA-AROMA as described previously (49). Further scanning parameters were as follows: field-of-view = 180 × 16.4 × 180 mm, flip angle = 20°, A/P phase encoding direction, SENSE factor 2.8, slice thickness = 1.5 mm with an interslice gap of 0.15 mm, in-plane voxel resolution = 1.25 × 1.25 mm, TE = 26 ms, and acquisition time = 30.5 min. The functional images consisted of 9 or 10 slices in the transverse plane in order to achieve optimal spatial and temporal resolution within the partial field of view. These slices were aimed at the SCN (based on immunocytochemical staining with anti-vasopressin), the visual cortex V1 region, and the CSF (see , for example). The dimensions of the SCN in adults are 1.1 mm (anterior–posterior) × 1.1 mm (left–right) × 1.7 mm (superior–inferior) (23), which are similar to the voxel size of the functional scans. Nevertheless, the group-level response average appeared larger than a single voxel because (i) the likelihood that the SCN is centered within a single voxel is very small. Rather, the SCN is located at the borders of the voxel raster, resulting in spread over up to 8 voxels (partial volume effect). (ii) Slight biological variations in SCN localization cause the group-level response to appear more spread out. (iii) Transforming the EPI functional images to the standard space, both with different voxel dimensions and orientation, contributes to the signal spreading out over multiple voxels. (iv) Spatial smoothing (2 mm) was performed. An additional whole-brain T2-weighted image using the same resolution as the functional time series data (1.25 × 1.25 × 1.65 mm) was also acquired in order to improve automatic registration for the partial field of view images.

Preprocessing.

The fMRI data were preprocessed using FSL 6.0.3 (FMRIB Software Library, Oxford, UK) (50). The T1-weighted scans were extracted, followed by two-step registration to align the fMRI data to the high-resolution anatomical T1-weighted image and to the MNI152 1-mm template brain. For the analysis of the SCN, manual registration of the T2-weighted to the T1-weighted scans was performed using ITK-SNAP (http://www.itksnap.org/pmwiki/pmwiki.php), focusing on the region of the optic chiasm. The entire optic chiasm outline was clearly visible and used for the manual alignment of the scans. In the second step, the T1-weighted scans were manually registered to the MNI152 standard space, also based on the optic chiasm outline, followed by nonlinear registration (10-mm warp resolution) using FSL FNIRT with a mask at the optic chiasm area that excluded large blood vessels. The average image for all functional (i.e., T2-weighted) scans transformed to MNI152 standard space clearly included the optic nerves (see the yellow rectangles in Fig. 1), indicating that manual registration was successful at aligning the relevant structures across participants and therefore accurately localized the SCN in all 12 participants. For quantification of the registration, a measure for overlay was calculated, as this is the most suitable approach for small, local structures (51). A mask was drawn at the region of the optic chiasm using the following coordinates: x: 79–100, y: 124–132, and z: 52–58 (). We compared the overlay of the automatically () and the manually registered scans of all participants in MNI152 standard space (). For both types of overlay, all 1,386 voxels in the mask were plotted in a histogram of voxel intensity. The histogram of the manual registration overlay showed a broader distribution than the histogram of the automatically registered overlay (). More low voxel intensities (dark areas) were observed in the manually registered overlay (), indicating that the dark areas, such as the optic chiasm, are aligned more accurately between subjects. In contrast, the automatically registered overlay showed more voxels in the middle gray range, indicating that the overlay had less discriminatory power in distinguishing different anatomical structures. In other words, the contours of the hypothalamic structures were more blurred following automatic registration as compared to manual registration. For the analysis of the visual cortex, we performed automatic registration using FSL. Functional data were first registered to the T2-weighted low-resolution scan using 3 degrees-of-freedom (DOF) rigid-body transformation, then aligned to the high-resolution structural scan using boundary-based registration (52); finally, the data were registered to the MNI152 template using 12 DOF linear transformation, followed by nonlinear transformation with 10-mm warp resolution. The mean plot of the functional scans with automatic FSL registration (FLIRT and FNIRT) shows correct alignment of the large brain structures; however, the SCN appears as a gray blur (Fig. 1), arguing that automatic registration is insufficient for analyzing small hypothalamic nuclei such as the SCN. For the GLM analysis, we used spatial smoothing with a Gaussian kernel of 2 mm. No spatial smoothing was performed for the waveform analysis, thus maintaining the original data. For motion correction, Elastix, an open-source registration toolbox, was used with Euler (rigid) transformation parameters (53). To reduce noise in the data, artifacts were removed using ICA-AROMA, which automatically removes noise from the data by regression, without requiring previously acquired training datasets (49). The de-noised data were high-pass filtered at 0.01 Hz.

Statistical Analysis.

Voxel-based GLM analysis was performed for each participant using Feat as implemented in FSL. Regressors were defined for each color separately and for all colors combined by convoluting the light protocols using a double gamma hemodynamic response function. Higher-level analysis was performed using the FLAME-1 mixed-effects model. The output z-stat map was set at a threshold of >2.3 or <−2.3 in order to identify voxels that showed a significant response to light. For the SCN analysis, a contrast of -1.0 was used to allow for characterization of the negative BOLD response. The region of interest was small, predefined and based on postmortem anatomical data (54), we used a voxel-based analysis that was not corrected for multiple testing. The uncorrected data were used for illustration purposes only, and not for statistical analysis, with the MNI152 brain (1 mm isotropic resolution) as background (Figs. 3 and 4 ). The analysis was spatially restricted to data extracted from an explicit mask. These SCN masks were drawn in standard space, based on an independent postmortem brain dataset (preventing circularity). The regions of interest were thus defined a priori. For the SCN, bilateral masks (3 × 4 × 3 mm in size) were drawn using the MNI152 coordinates (mm): x: 84–86 and 93–95, y: 127–130, and z: 55–57. bilateral masks were also drawn for the CSF using the following coordinates (mm): x: 75–77 and 102–104, y: 125–128, and z: 52–54. Finally, bilateral masks were drawn for the visual cortex V1 region using the following coordinates: x: 85–87 and 91–93, y: 46–49, and z: 72–74. For each participant, the masks were transformed to native space, thresholded at 0.5, and binarized. Time series data from the transformed masks were extracted using the fslmeants command. Average waveforms were calculated by averaging the signal measured for each stimulus, synchronized to time 0 (i.e., the onset of the light stimulus). Data were normalized by dividing each data point in the average light stimulus by the mean baseline value (measured 15 s prior to the onset of the light stimulus) and then calculated as the percent change in the BOLD signal. To quantify the light response, we used the average percent change in the BOLD signal measured during the last 15 s of the light stimulus.
  53 in total

1.  Modeling the role of mid-wavelength cones in circadian responses to light.

Authors:  Ouria Dkhissi-Benyahya; Claude Gronfier; Wena De Vanssay; Frederic Flamant; Howard M Cooper
Journal:  Neuron       Date:  2007-03-01       Impact factor: 17.173

2.  Activation of suprachiasmatic nuclei and primary visual cortex depends upon time of day.

Authors:  Ram L P Vimal; Manju-Uma C Pandey-Vimal; Love-Shyam P Vimal; Blaise B Frederick; Edward G Stopa; Perry F Renshaw; Shalini P Vimal; David G Harper
Journal:  Eur J Neurosci       Date:  2009-01       Impact factor: 3.386

Review 3.  Linking neural activity and molecular oscillations in the SCN.

Authors:  Christopher S Colwell
Journal:  Nat Rev Neurosci       Date:  2011-09-02       Impact factor: 34.870

4.  Neural inhibition can explain negative BOLD responses: A mechanistic modelling and fMRI study.

Authors:  S Sten; K Lundengård; S T Witt; G Cedersund; F Elinder; M Engström
Journal:  Neuroimage       Date:  2017-07-04       Impact factor: 6.556

5.  Randomised controlled trial of the efficacy of a blue-enriched light intervention to improve alertness and performance in night shift workers.

Authors:  Tracey L Sletten; Suzanne Ftouni; Christian L Nicholas; Michelle Magee; Ronald R Grunstein; Sally Ferguson; David J Kennaway; Darren O'Brien; Steven W Lockley; Shantha M W Rajaratnam
Journal:  Occup Environ Med       Date:  2017-06-19       Impact factor: 4.402

6.  Luminance coding in a circadian pacemaker: the suprachiasmatic nucleus of the rat and the hamster.

Authors:  J H Meijer; G A Groos; B Rusak
Journal:  Brain Res       Date:  1986-09-10       Impact factor: 3.252

7.  Photically responsive neurons in the hypothalamus of a diurnal ground squirrel.

Authors:  J H Meijer; B Rusak; M E Harrington
Journal:  Brain Res       Date:  1989-11-06       Impact factor: 3.252

8.  Functional diversity of human intrinsically photosensitive retinal ganglion cells.

Authors:  Ludovic S Mure; Frans Vinberg; Anne Hanneken; Satchidananda Panda
Journal:  Science       Date:  2019-12-06       Impact factor: 47.728

9.  Constant light desynchronizes mammalian clock neurons.

Authors:  Hidenobu Ohta; Shin Yamazaki; Douglas G McMahon
Journal:  Nat Neurosci       Date:  2005-01-30       Impact factor: 24.884

10.  Melanopsin and rod-cone photoreceptive systems account for all major accessory visual functions in mice.

Authors:  S Hattar; R J Lucas; N Mrosovsky; S Thompson; R H Douglas; M W Hankins; J Lem; M Biel; F Hofmann; R G Foster; K-W Yau
Journal:  Nature       Date:  2003-06-15       Impact factor: 49.962

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1.  Neuronal Bmal1 regulates retinal angiogenesis and neovascularization in mice.

Authors:  Vijay K Jidigam; Onkar B Sawant; Rebecca D Fuller; Kenya Wilcots; Rupesh Singh; Richard A Lang; Sujata Rao
Journal:  Commun Biol       Date:  2022-08-06

Review 2.  Chrono-communication and cardiometabolic health: The intrinsic relationship and therapeutic nutritional promises.

Authors:  Pamela Senesi; Anna Ferrulli; Livio Luzi; Ileana Terruzzi
Journal:  Front Endocrinol (Lausanne)       Date:  2022-09-13       Impact factor: 6.055

3.  Inhibitory responses to retinohypothalamic tract stimulation in the circadian clock of the diurnal rodent Rhabdomys pumilio.

Authors:  Robin A Schoonderwoerd; Pablo de Torres Gutiérrez; Ruben Blommers; Anouk W van Beurden; Tineke C J J Coenen; Nathan J Klett; Stephan H Michel; Johanna H Meijer
Journal:  FASEB J       Date:  2022-08       Impact factor: 5.834

  3 in total

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