| Literature DB >> 35309948 |
Yufeng Jiang1, Ling Chen2, Zhujun Chao3, Tan Chen1, Yafeng Zhou1.
Abstract
Background: Ferroptosis is a new form of cell death recently discovered that is distinct from apoptosis, necrosis and autophagy. This article is expected to provide a new direction for the treatment of cardiomyopathy in the future by screening potential drug targets associated with ferroptosis.Entities:
Keywords: cardiomyopathy; ferroptosis; idiopathic; ischemic; precision medicine
Year: 2022 PMID: 35309948 PMCID: PMC8927736 DOI: 10.3389/fcell.2022.817819
Source DB: PubMed Journal: Front Cell Dev Biol ISSN: 2296-634X
FIGURE 1Differential expressed gene (DEG) analysis on ischemic cardiomyopathy. (A) Volcanic plots of gene expression of ischemic cardiomyopathy in GSE5406. Red represents upregulated DEGs, blue represents downregulated DEGs, grey represents genes which are not differentially expressed. (B) Cross comparability evaluation of microarray data. (C) Heat map of the DEGs. (D) Venn diagram of ferroptosis related DEGs.
FIGURE 2Differential expressed gene (DEG) analysis on idiopathic cardiomyopathy. (A) Volcanic plots of gene expression of idiopathic cardiomyopathy in GSE5406. (B) Cross comparability evaluation of microarray data. (C) Heat map of the DEGs. (D) Venn diagram of ferroptosis related DEGs.
Gene ontology enrichment analysis for ischemic cardiomyopathy.
| Category | GO ID | Term | Count |
|
|---|---|---|---|---|
| Biological process | GO:0043066 | Negative regulation of apoptotic process | 4 | 0.01 |
| GO:0009812 | Flavonoid metabolic process | 2 | 0.01 | |
| GO:0042493 | Response to drug | 3 | 0.03 | |
| GO:0006446 | Regulation of translational initiation | 2 | 0.03 | |
| GO:0034644 | Cellular response to UV | 2 | 0.04 | |
| Cell component | GO:0031012 | Extracellular matrix | 4 | 0.001 |
| GO:0005739 | Mitochondrion | 6 | 0.002 | |
| GO:0005829 | Cytosol | 8 | 0.01 | |
| GO:0070062 | Extracellular exosome | 7 | 0.01 | |
| GO:0005925 | Focal adhesion | 3 | 0.04 | |
| Molecular function | GO:0005515 | Protein binding | 13 | 0.003 |
| GO:0044822 | Poly(A) RNA binding | 5 | 0.009 | |
| GO:0016491 | Oxidoreductase activity | 3 | 0.01 |
Gene ontology enrichment analysis for idiopathic cardiomyopathy.
| Category | GO ID | Term | Count |
|
|---|---|---|---|---|
| Biological process | GO:0044344 | Cellular response to fibroblast growth factor stimulus | 3 | <0.001 |
| GO:0043066 | Negative regulation of apoptotic process | 5 | 0.001 | |
| GO:0042493 | Response to drug | 4 | 0.003 | |
| GO:0043488 | Regulation of mRNA stability | 3 | 0.004 | |
| GO:0009812 | Flavonoid metabolic process | 2 | 0.01 | |
| GO:0000289 | Nuclear-transcribed mRNA poly(A) tail shortening | 2 | 0.03 | |
| GO:0071364 | Cellular response to epidermal growth factor stimulus | 2 | 0.03 | |
| GO:0006446 | Regulation of translational initiation | 2 | 0.03 | |
| GO:0034644 | Cellular response to UV | 2 | 0.04 | |
| GO:0006631 | Fatty acid metabolic process | 2 | 0.05 | |
| Cell component | GO:0005829 | Cytosol | 12 | <0.001 |
| GO:0005739 | Mitochondrion | 7 | 0.001 | |
| GO:0042470 | Melanosome | 3 | 0.004 | |
| GO:0005634 | Nucleus | 11 | 0.01 | |
| GO:0070062 | Extracellular exosome | 7 | 0.03 | |
| GO:0031012 | Extracellular matrix | 3 | 0.03 | |
| GO:0005925 | Focal adhesion | 3 | 0.05 | |
| GO:0005886 | Plasma membrane | 8 | 0.05 | |
| Molecular function | GO:0005515 | Protein binding | 16 | <0.001 |
| GO:0044822 | Poly(A) RNA binding | 6 | 0.002 | |
| GO:0016491 | Oxidoreductase activity | 3 | 0.01 | |
| GO:0008017 | Microtubule binding | 3 | 0.01 | |
| GO:0019901 | Protein kinase binding | 3 | 0.04 |
Kyoto Encyclopedia of Genes and Genomes pathway analysis for ischemic cardiomyopathy and idiopathic cardiomyopathy.
| Term | Count |
| |
|---|---|---|---|
| Ischemic cardiomyopathy | MAPK signaling pathway | 3 | 0.04 |
| HTLV-I infection | 3 | 0.04 | |
| Idiopathic cardiomyopathy | HTLV-I infection | 4 | 0.01 |
| PI3K-Akt signaling pathway | 4 | 0.02 | |
| Hepatitis B | 3 | 0.02 | |
| Hippo signaling pathway | 3 | 0.02 |
FIGURE 3The protein–protein interaction network constructed via STRING database representing the degree of gene interaction. (A) ischemic cardiomyopathy. (B) idiopathic cardiomyopathy.
FIGURE 4Identification of hub genes using Cytoscape and MCODE plugin. (A) ischemic cardiomyopathy. (B) idiopathic cardiomyopathy.
Top 10 prediction results from cMap for ischemic cardiomyopathy.
| Score | Name | Description |
|---|---|---|
| −99.86 | QW-BI-011 | Histone lysine methyltransferase inhibitor |
| −99.82 | SA-792709 | Retinoid receptor agonist |
| −99.79 | caffeic-acid | Lipoxygenase inhibitor |
| −99.77 | capsazepine | TRPV agonist |
| −99.75 | Ritonavir | HIV protease inhibitor |
| −99.75 | CAY-10618 | NAMPT inhibitor |
| −99.75 | econazole | Bacterial cell wall synthesis inhibitor |
| −99.72 | alvespimycin | HSP inhibitor |
| −99.68 | WR-216174 | PFMRK inhibitor |
| −99.67 | diphencyprone | Immunostimulant |
Top10 prediction results from cMap for idiopathic cardiomyopathy.
| Score | Name | Description |
|---|---|---|
| −99.93 | varenicline | Acetylcholine receptor agonist |
| −99.93 | RO-90-7501 | Beta amyloid inhibitor |
| −99.93 | erythrosine | Coloring agent |
| −99.93 | Tofacitinib | JAK inhibitor |
| −99.89 | fasudil | Rho associated kinase inhibitor |
| −99.89 | rucaparib | PARP inhibitor |
| −99.86 | VX-702 | p38 MAPK inhibitor |
| −99.86 | nisoxetine | Norepinephrine reuptake inhibitor |
| −99.86 | lobaric-acid | Tyrosine phosphatase inhibitor |
| −99.82 | spironolactone | Mineralocorticoid receptor antagonist |