| Literature DB >> 35309889 |
Liang Jiang1, Chuanyang Zhang2, Siyu Wang1, Zhongping Ai1, Tingwen Shen3, Hong Zhang3, Shaofeng Duan4, Xindao Yin1, Yu-Chen Chen1.
Abstract
Neuroimaging biomarkers that predict the edema after acute stroke may help clinicians provide targeted therapies and minimize the risk of secondary injury. In this study, we applied pretherapy MRI radiomics features from infarction and cerebrospinal fluid (CSF) to predict edema after acute ischemic stroke. MRI data were obtained from a prospective, endovascular thrombectomy (EVT) cohort that included 389 patients with acute stroke from two centers (dataset 1, n = 292; dataset 2, n = 97), respectively. Patients were divided into edema group (brain swelling and midline shift) and non-edema group according to CT within 36 h after therapy. We extracted the imaging features of infarct area on diffusion weighted imaging (DWI) (abbreviated as DWI), CSF on fluid-attenuated inversion recovery (FLAIR) (CSFFLAIR) and CSF on DWI (CSFDWI), and selected the optimum features associated with edema for developing models in two forms of feature sets (DWI + CSFFLAIR and DWI + CSFDWI) respectively. We developed seven ML models based on dataset 1 and identified the most stable model. External validations (dataset 2) of the developed stable model were performed. Prediction model performance was assessed using the area under the receiver operating characteristic curve (AUC). The Bayes model based on DWI + CSFFLAIR and the RF model based on DWI + CSFDWI had the best performances (DWI + CSFFLAIR: AUC, 0.86; accuracy, 0.85; recall, 0.88; DWI + CSFDWI: AUC, 0.86; accuracy, 0.84; recall, 0.84) and the most stability (RSD% in DWI + CSFFLAIR AUC: 0.07, RSD% in DWI + CSFDWI AUC: 0.09), respectively. External validation showed that the AUC of the Bayes model based on DWI + CSFFLAIR was 0.84 with accuracy of 0.77 and area under precision-recall curve (auPRC) of 0.75, and the AUC of the RF model based on DWI + CSFDWI was 0.83 with accuracy of 0.81 and the auPRC of 0.76. The MRI radiomics features from infarction and CSF may offer an effective imaging biomarker for predicting edema.Entities:
Keywords: biomarker; cerebrospinal fluid; machine learning; neuroimaging; stroke
Year: 2022 PMID: 35309889 PMCID: PMC8929352 DOI: 10.3389/fnagi.2022.782036
Source DB: PubMed Journal: Front Aging Neurosci ISSN: 1663-4365 Impact factor: 5.750
FIGURE 1The flowchart of this study.
FIGURE 2Overview of image processing with diffusion weighted imaging (DWI) and fluid attenuated inversion recovery (FLAIR) images for each patient. Infarct regions were segmented on the DWI images, and the cerebrospinal fluid regions were segmented on the FLAIR images (CSFFLAIR). The FLAIR images were overlaid onto the DWI images, and the cerebrospinal fluid regions on DWI images (CSFDWI) were segmented on the registered DWI images. One thousand three hundred and sixteen features were extracted from DWI volumes of interest (VOIs), CSFFLAIR VOIs and CSFDWI VOIs, respectively.
Baseline characteristics of the study population.
| Variables | Dataset 1 (Training set; | Dataset 2 (Validation set; | ||||
| Edema group | Non-edema group | Edema group | Non-edema group | |||
| ( | ( | ( | ( | |||
| Sex (male), | 44 (64.71%) | 83 (57.64%) | 0.327 | 12 (54.55%) | 19 (50.00%) | 0.734 |
| Age, mean (SD), year | 68.24 ± 15.38 | 67.41 ± 11.29 | 0.812 | 70.15 ± 12.34 | 68.65 ± 12.37 | 0.654 |
| Time from symptom to MRI, mean (SD), min | 213.81 ± 66.25 | 204.15 ± 79.59 | 0.411 | 229.43 ± 114.95 | 221.38 ± 109.20 | 0.793 |
| Time from symptom to IVT, mean (SD), min | 189.65 ± 99.47 | 178.32 ± 106.27 | 0.436 | 206.63 ± 103.44 | 197.55 ± 107.25 | 0.496 |
| Time from symptom to EVT, mean (SD), min | 256.73 ± 103.59 | 246.11 ± 112.48 | 0.314 | 267.34 ± 112.34 | 250.27 ± 102.08 | 0.355 |
| NIHSS at admission, mean (SD) | 13.80 ± 6.14 | 12.11 ± 7.02 | 0.380 | 14.211 ± 6.25 | 13.21 ± 6.88 | 0.315 |
| Diabetes mellitus, | 19 (27.94%) | 25 (17.36%) | 0.076 | 5 (22.73%) | 6 (15.79%) | 0.503 |
| Hypertension, | 59(86.76%) | 109 (75.69%) | 0.064 | 18 (81.82%) | 29 (76.32%) | 0.618 |
| Atrial fibrillation, | 26 (38.24%) | 39 (27.08%) | 0.100 | 6 (27.27%) | 9 (23.68%) | 0.757 |
| Hyperlipidemia, | 6 (8.82%) | 8 (5.56%) | 0.371 | 2 (9.09%) | 2 (5.26%) | 0.971 |
| Therapy, | 0.815 | 0.592 | ||||
| EVT | 38 (55.88%) | 78 (54.17%) | 12 (54.55%) | 18 (47.37%) | ||
| IVT + EVT | 30 (44.12%) | 66 (45.83%) | 10 (50.00%) | 20 (52.63%) | ||
NIHSS, National Institutes of Health Stroke Scale; EVT, endovascular thrombectomy; IVT, intravenous thrombolysis.
FIGURE 3Heatmaps of the selected 15 features (A) and 10 features (B).
The performance metrics of 7 models built with 7machine learning methods.
| Model | ML methods | AUC | Accuracy | Sensitivity | Specificity | NPV | PPV | Precision | Recall |
| DWI + CSFFLAIR | Adaboost | 0.81 | 0.86 | 0.82 | 0.83 | 0.91 | 0.81 | 0.82 | 0.88 |
| KNN | 0.72 | 0.76 | 0.82 | 0.80 | 0.91 | 0.70 | 0.82 | 0.73 | |
| Bayes | 0.86 | 0.85 | 0.80 | 0.85 | 0.91 | 0.83 | 0.80 | 0.88 | |
| NNET | 0.80 | 0.85 | 0.84 | 0.84 | 0.92 | 0.80 | 0.84 | 0.86 | |
| RF | 0.78 | 0.85 | 0.86 | 0.85 | 0.93 | 0.78 | 0.86 | 0.85 | |
| svmRadial | 0.72 | 0.76 | 0.86 | 0.82 | 0.83 | 0.71 | 0.70 | 0.79 | |
| svmLinear | 0.73 | 0.82 | 0.86 | 0.82 | 0.92 | 0.73 | 0.86 | 0.80 | |
| DWI + CSFDWI | Adaboost | 0.75 | 0.80 | 0.86 | 0.82 | 0.93 | 0.70 | 0.86 | 0.77 |
| KNN | 0.76 | 0.84 | 0.76 | 0.79 | 0.88 | 0.75 | 0.76 | 0.80 | |
| Bayes | 0.84 | 0.83 | 0.87 | 0.81 | 0.87 | 0.75 | 0.76 | 0.80 | |
| NNET | 0.78 | 0.83 | 0.74 | 0.81 | 0.87 | 0.78 | 0.74 | 0.88 | |
| RF | 0.86 | 0.84 | 0.85 | 0.86 | 0.90 | 0.80 | 0.79 | 0.84 | |
| svmRadial | 0.78 | 0.81 | 0.71 | 0.77 | 0.87 | 0.77 | 0.71 | 0.87 | |
| svmLinear | 0.79 | 0.82 | 0.79 | 0.81 | 0.87 | 0.79 | 0.71 | 0.87 |
KNN, k-nearest neighbor; NNET, neural network; RF, random forest; AUC, area under curve; NPV, negative predictive value; PPV, positive predictive value.
FIGURE 4Accuracy and AUC vs. RSD of the 7 models, (A) models based on DWI + CSFFLAIR features; (B) models based on DWI + CSFDWI features.
FIGURE 5The ROC curves (A) and the precision-recall curves (PRCs) (B) of the Bayes model based on DWI + CSFFLAIR features and the RF model based on DWI + CSFDWI features from external validation for predicting edema after acute stroke.
The performance metrics of external validation.
| Model | ML methods | AUC | Accuracy | Sensitivity | Specificity | NPV | PPV | Precision | Recall |
| DWI + CSFFLAIR | Bayes | 0.84 | 0.77 | 0.87 | 0.78 | 0.87 | 0.78 | 0.87 | 0.75 |
| DWI + CSFDWI | RF | 0.83 | 0.81 | 0.81 | 0.74 | 0.81 | 0.75 | 0.81 | 0.72 |
| 0.879 | 0.483 | 0.811 | 0.872 | 0.823 | 0.848 | 0.771 | 0.763 |
DWI, diffusion weighted imaging; FLAIR, fluid attenuated inversion recovery; AUC, area under curve; NPV, negative predictive value; PPV, positive predictive value.