| Literature DB >> 35309504 |
Jiayang Guo1, Naian Xiao2, Hailong Li3, Lili He3, Qiyuan Li1, Ting Wu4, Xiaonan He5, Peizhi Chen6, Duo Chen7, Jing Xiang8, Xueping Peng9.
Abstract
High-frequency oscillations (HFOs), observed within 80-500 Hz of magnetoencephalography (MEG) data, are putative biomarkers to localize epileptogenic zones that are critical for the success of surgical epilepsy treatment. It is crucial to accurately detect HFOs for improving the surgical outcome of patients with epilepsy. However, in clinical practices, detecting HFOs in MEG signals mainly depends on visual inspection by clinicians, which is very time-consuming, labor-intensive, subjective, and error-prone. To accurately and automatically detect HFOs, machine learning approaches have been developed and have demonstrated the promising results of automated HFO detection. More recently, the transformer-based model has attracted wide attention and achieved state-of-the-art performance on many machine learning tasks. In this paper, we are investigating the suitability of transformer-based models on the detection of HFOs. Specifically, we propose a transformer-based HFO detection framework for biomedical MEG one-dimensional signal data. For signal classification, we develop a transformer-based HFO (TransHFO) classification model. Then, we investigate the relationship between depth of deep learning models and classification performance. The experimental results show that the proposed framework outperforms the state-of-the-art HFO classifiers, increasing classification accuracy by 7%. Furthermore, we find that shallow TransHFO ( < 10 layers) outperforms deep TransHFO models (≥10 layers) on most data augmented factors.Entities:
Keywords: deep learning; epilepsy; high-frequency oscillation; magnetoencephalography; transformer
Year: 2022 PMID: 35309504 PMCID: PMC8931499 DOI: 10.3389/fmolb.2022.822810
Source DB: PubMed Journal: Front Mol Biosci ISSN: 2296-889X
FIGURE 1The proposed Transformer-based HFO detection framework is designed specifically for the presurgical diagnosis of biomedical one-dimensional MEG signal data. Briefly, the HFO classification framework includes signal segmentation, signal augmentation, TransHFO signal classification, and signal labeling. This framework achieves more robust and reliable performance on HFO classification than baseline models. Furthermore, we find that shallow TransHFO ( 10 layers) outperforms deep TransHFO (≥10 layers) on most data augmented factors, revealing the importance of human labeled data and the potential of deep-learning methods for automatic diagnosis of medical signal.
FIGURE 2Transformer-based HFO (TransHFO) classification model.
Performance comparison of different models. The TransHFO achieved better performance than LR, SMO, and ResDen models in both no data augmentation and data augmentation scenarios.
| Model | Accuracy | Precision | Sensitivity | Specificity | F-score |
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| LR | 0.807 7 | 0.909 1 | 0.714 3 | 0.916 7 | 0.800 0 |
| SMO | 0.846 2 | 0.916 7 | 0.785 7 | 0.916 7 | 0.846 2 |
| ResDen | 0.923 1 | 0.928 6 | 0.928 6 | 0.916 7 | 0.928 6 |
| TransHFO |
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| LR (Aug) | 0.807 7 | 0.909 1 | 0.714 3 | 0.916 7 | 0.800 0 |
| SMO(Aug) | 0.884 6 | 0.923 1 | 0.857 1 | 0.916 7 | 0.888 9 |
| ResDen (Aug) | 0.948 7 | 0.952 4 | 0.952 4 | 0.944 4 | 0.952 4 |
| TransHFO(Aug) |
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Bold values represents the best performance of different models in the corresponding Evaluation Metrics
FIGURE 3Performance of different models with varying augmentation factors from 0 to 40. The models had better performance with augmentation factors 5, 10, and 20. (A) Accuracy. (B) F-score. (C) Precision. (D) Sensitivity. (E) Specificity.
FIGURE 4Performance of different augmentation factors (0, 1, 5, 10, 20, and 40) with varying N, the number of identical layers in TransHFO framework, from 1 to 40. (A) Accuracy. (B) F-score. (C) Precision. (D) Sensitivity. (E) Specificity.