Literature DB >> 35308930

NetworkSIR and EnvironmentalSIR: Effective, Open-Source Epidemic Modeling in the Absence of Data.

Madison A Pickering1,2, Subbarayan Venkatesan1, Christoph U Lehmann2, Sameh Saleh2, Richard J Medford2.   

Abstract

The rapidly changing situation characterized by the COVID-19 pandemic highlighted a need for new epidemic modeling strategies. Due to an absence of computationally efficient models robust to paucity of reliable data, we developed NetworkSIR, a model capable of making predictions when only the approximate population density is known. We then extend NetworkSIR to capture the effect of indirect disease spread on the progression of an epidemic (EnvironmentalSIR). ©2021 AMIA - All rights reserved.

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Year:  2022        PMID: 35308930      PMCID: PMC8861737     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  16 in total

1.  Infection dynamics on scale-free networks.

Authors:  R M May; A L Lloyd
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-11-19

2.  Severe acute respiratory syndrome--Singapore, 2003.

Authors: 
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2003-05-09       Impact factor: 17.586

3.  Modelling disease outbreaks in realistic urban social networks.

Authors:  Stephen Eubank; Hasan Guclu; V S Anil Kumar; Madhav V Marathe; Aravind Srinivasan; Zoltán Toroczkai; Nan Wang
Journal:  Nature       Date:  2004-05-13       Impact factor: 49.962

Review 4.  "Herd immunity": a rough guide.

Authors:  Paul Fine; Ken Eames; David L Heymann
Journal:  Clin Infect Dis       Date:  2011-04-01       Impact factor: 9.079

5.  A high-resolution human contact network for infectious disease transmission.

Authors:  Marcel Salathé; Maria Kazandjieva; Jung Woo Lee; Philip Levis; Marcus W Feldman; James H Jones
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

6.  How far droplets can move in indoor environments--revisiting the Wells evaporation-falling curve.

Authors:  X Xie; Y Li; A T Y Chwang; P L Ho; W H Seto
Journal:  Indoor Air       Date:  2007-06       Impact factor: 5.770

7.  High-resolution measurements of face-to-face contact patterns in a primary school.

Authors:  Juliette Stehlé; Nicolas Voirin; Alain Barrat; Ciro Cattuto; Lorenzo Isella; Jean-François Pinton; Marco Quaggiotto; Wouter Van den Broeck; Corinne Régis; Bruno Lina; Philippe Vanhems
Journal:  PLoS One       Date:  2011-08-16       Impact factor: 3.240

8.  A data-driven network model for the emerging COVID-19 epidemics in Wuhan, Toronto and Italy.

Authors:  Ling Xue; Shuanglin Jing; Joel C Miller; Wei Sun; Huafeng Li; José Guillermo Estrada-Franco; James M Hyman; Huaiping Zhu
Journal:  Math Biosci       Date:  2020-06-01       Impact factor: 2.144

9.  Insights into the transmission of respiratory infectious diseases through empirical human contact networks.

Authors:  Chunlin Huang; Xingwu Liu; Shiwei Sun; Shuai Cheng Li; Minghua Deng; Guangxue He; Haicang Zhang; Chao Wang; Yang Zhou; Yanlin Zhao; Dongbo Bu
Journal:  Sci Rep       Date:  2016-08-16       Impact factor: 4.379

Review 10.  Mathematical models of infectious disease transmission.

Authors:  Nicholas C Grassly; Christophe Fraser
Journal:  Nat Rev Microbiol       Date:  2008-06       Impact factor: 60.633

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  1 in total

Review 1.  Social media: A new tool for outbreak surveillance.

Authors:  Averi E Wilson; Christoph U Lehmann; Sameh N Saleh; John Hanna; Richard J Medford
Journal:  Antimicrob Steward Healthc Epidemiol       Date:  2021-11-17
  1 in total

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