| Literature DB >> 35307021 |
Ling Sun1, Yafei Chang2, Qinghua Yuan3, Xiang Ma4, Peipei Jiang5, Yitong Ma6.
Abstract
BACKGROUND: This study is aimed at investigating the association of Fibrillin-1 (FBN1) and transforming growth factor β (TGF-β) signaling-related gene polymorphisms with the susceptibility of Stanford type B aortic dissection (AD) and its clinical prognostic outcomes.Entities:
Keywords: Aortic dissection; FBN1; GMDR; SNP; TGFB1; TGFB2
Mesh:
Substances:
Year: 2022 PMID: 35307021 PMCID: PMC8935688 DOI: 10.1186/s12920-022-01213-z
Source DB: PubMed Journal: BMC Med Genomics ISSN: 1755-8794 Impact factor: 3.063
General characteristics between case and control subjects
| Characteristics | Case (N = 164) | Control (N = 317) | |
|---|---|---|---|
| Age (years) | 51.47 ± 11.29 | 55.43 ± 10.04 | < 0.001 |
| Male (n, %) | 136 (82.9) | 185 (58.4) | < 0.001 |
| SBP (mmHg) | 154.68 ± 30.56 | 126 ± 17.46 | < 0.001 |
| DBP (mmHg) | 87.99 ± 18.64 | 78.97 ± 26.58 | < 0.001 |
| BMI (kg/m2) | 26.28 ± 4.67 | 25.29 ± 3.34 | 0.033 |
| WBC (10^9/L) | 11.68 ± 4.19 | 6.41 ± 1.88 | < 0.001 |
| Creatinine (umol/L) | 92.79 ± 96.87 | 69.18 ± 18.35 | 0.002 |
| Uric acid (umol/L) | 333.23 ± 108.02 | 309.94 ± 87.56 | 0.018 |
| Glucose (mmol/L) | 7.19 ± 2.39 | 5.49 ± 1.86 | < 0.001 |
| GSP (mmol/L) | 2 ± 0.37 | 2.28 ± 0.52 | < 0.001 |
| Triglyceride (mmol/L) | 1.56 ± 0.85 | 1.56 ± 0.72 | 0.949 |
| Total cholesterol (mmol/L) | 4.2 ± 1.01 | 4.05 ± 0.97 | 0.113 |
| HDL-C (mmol/L) | 1.06 ± 0.49 | 1.14 ± 0.34 | 0.063 |
| LDL-C (mmol/L) | 2.61 ± 0.78 | 2.68 ± 1.05 | 0.418 |
| Hypertension (n, %) | 128 (78.0) | 132 (41.6) | 0.106 |
| Diabetes (n, %) | 9 (5.5) | 31 (9.8) | < 0.001 |
| Smoking (n, %) | 99 (60.4) | 76 (24.0) | < 0.001 |
| Drinking (n, %) | 82 (50.0) | 52 (16.4) | < 0.001 |
SBP, systolic blood pressure; DBP, diastolic blood pressure; BMI, body mass index; WBC, white blood cell; BUN, blood urea nitrogen; GSP, Glycosylated serum protein; HDL-C, high density lipoprotein cholesterol; LDL-C, low density lipoprotein cholesterol
Description for genotype and allele frequencies in case and control group
| SNP | Genotype/allele | Case, n (%) | Control, n (%) | |
|---|---|---|---|---|
| rs145233125 | TT | 136 (82.93) | 268 (84.54) | 0.711 |
| TC | 23 (14.02) | 43 (13.56) | ||
| CC | 5 (3.05) | 6 (1.89) | ||
| T | 295 (89.94) | 579 (91.32) | 0.480 | |
| C | 33 (10.06) | 55 (8.68) | ||
| rs11070646 | CC | 119 (72.56) | 247 (77.92) | 0.142 |
| CG | 38 (23.17) | 65 (20.50) | ||
| GG | 7 (4.27) | 5 (1.58) | ||
| C | 276 (84.15) | 559 (88.17) | 0.081 | |
| G | 52 (15.85) | 75 (11.83) | ||
| rs201170905 | AA | 71 (43.29) | 176 (55.52) | 0.011 |
| AG | 63 (38.41) | 123 (38.80) | ||
| GG | 30 (18.29) | 18 (5.68) | ||
| A | 205 (62.50) | 475 (74.92) | 0.001 | |
| G | 123 (37.50) | 159 (25.08) | ||
| rs1800469 | AA | 30 (18.29) | 92 (29.02) | 0.037 |
| AG | 88 (53.66) | 146 (46.06) | ||
| GG | 46 (28.05) | 79 (24.92) | ||
| A | 148 (45.12) | 330 (52.05) | 0.042 | |
| G | 180 (54.88) | 304 (47.95) | ||
| rs900 | AA | 16 (9.76) | 28 (8.83) | 0.641 |
| AT | 68 (41.46) | 120 (37.85) | ||
| TT | 80 (48.78) | 169 (53.31) | ||
| A | 100 (30.49) | 176 (27.76) | 0.375 | |
| T | 228 (69.51) | 458 (72.24) |
Analysis of the association between genetic models and aortic dissection risk
| SNP | Genetic model | Genotype | OR | 95% CI | |
|---|---|---|---|---|---|
| rs145233125 | Dominant | (TC + CC)/TT | 1.042 | 0.868–1.251 | 0.647 |
| Recessive | CC/(TT + TC) | 1.213 | 0.705–2.089 | 0.421 | |
| Additive | TT | 1 | |||
| TC | 1.018 | 0.842–1.231 | 0.850 | ||
| CC | 1.216 | 0.706–2.095 | 0.415 | ||
| rs11070646 | Dominant | (CG + GG)/CC | 1.109 | 0.942–1.305 | 0.192 |
| Recessive | GG/(CC + CG) | 1.597 | 0.815–3.128 | 0.073 | |
| Additive | CC | 1 | |||
| CG | 1.069 | 0.908–1.26 | 0.405 | ||
| GG | 1.620 | 0.826–3.175 | 0.062 | ||
| rs201170905 | Dominant | (AG + GG)/AA | 1.183 | 1.038–1.348 | 0.011 |
| Recessive | GG/(AA + AG) | 1.841 | 1.271–2.668 | 0.001 | |
| Additive | AA | 1 | |||
| AG | 1.078 | 0.946–1.227 | 0.253 | ||
| GG | 1.900 | 1.308–2.761 | 0.001 | ||
| rs1800469 | Dominant | (AG + GG)/AA | 1.203 | 1.058–1.369 | 0.010 |
| Recessive | GG/(AA + AG) | 1.058 | 0.908–1.232 | 0.458 | |
| Additive | AA | 1 | |||
| AG | 1.209 | 1.049–1.393 | 0.013 | ||
| GG | 1.193 | 1.009–1.411 | 0.038 | ||
| rs900 | Dominant | (AT + TT)/AA | 0.962 | 0.762–1.215 | 0.739 |
| Recessive | TT/(AA + AT) | 0.936 | 0.822–1.065 | 0.313 | |
| Additive | AA | 1 | |||
| AT | 0.997 | 0.778–1.277 | 0.981 | ||
| TT | 0.938 | 0.738–1.191 | 0.706 |
Generalized multifactor dimensionality reduction analysis of gene–gene interactions and aortic dissection risk
| Model | Training bal. acc | Testing bal. acc | Sign test (p) | CV consistency |
|---|---|---|---|---|
| FBN1rs201170905 | 0.5653 | 0.5189 | 5 (0.6230) | 9/10 |
| FBN1rs201170905, TGFB2rs900 | 0.5968 | 0.5149 | 7(0.1719) | 5/10 |
| FBN1rs201170905, TGFB1rs1800469, TGFB2rs900 | 0.6391 | 0.5977 | 10 (0.0010) | 10/10 |
| FBN1rs11070646, FBN1rs201170905, TGFB1rs1800469, TGFB2rs900 | 0.6572 | 0.5417 | 8 (0.0547) | 8/10 |
| FBN1rs145233125, FBN1rsl 1,070,646, FBN1rs201170905, TGFB1rs1800469, TGFB2rs900 | 0.6739 | 0.5395 | 7 (0.1719) | 10/10 |
Generalized multifactor dimensionality reduction analysis of gene–environment interactions and aortic dissection risk
| Model | Training bal. acc | Testing bal. acc | Sign test (p) | CV consistency |
|---|---|---|---|---|
| smoking | 0.6920 | 0.6703 | 10 (0.0010) | 9/10 |
| BMI ≥ 24 kg/m2, smoking | 0.7322 | 0.6907 | 10 (0.0010) | 7/10 |
| FBN1rs201170905, BMI ≥ 24 kg/m2, smoking | 0.7597 | 0.6922 | 10 (0.0010) | 6/10 |
| FBN1rs201170905, BMI ≥ 24 kg/m2, smoking, hypertension | 0.7876 | 0.6912 | 10 (0.0010) | 4/10 |
| FBN1rs201170905, TGFB1rs1800469, TGFB2rs900, BMI ≥ 24 kg/m2, smoking | 0.8295 | 0.6798 | 10 (0.0010) | 8/10 |
| FBN1rs201170905, TGFB1rs1800469, TGFB2rs900, BMI ≥ 24 kg/m2, smoking, hypertension | 0.8717 | 0.7639 | 10 (0 0010) | 9/10 |
| FBN1rs11070646, FBN1rs201170905, TGFB1rs1800469, TGFB2rs900, BMI ≥ 24 kg/m2, smoking, hypertension | 0.9078 | 0.7380 | 10 (0.0010) | 5/10 |
| FBN1rs11070646, FBN1rs201170905, TGFB1rs1800469, TGFB2rs900, BMI ≥ 24 kg/m2, smoking, drinking, hypertension | 0.9330 | 0.7560 | 10 (0.0010) | 10/10 |
| FBN1rs11070646, FBN1rs201170905, TGFB1rs1800469, TGFB2rs900, BMI ≥ 24 kg/m2, dyslipidemia, smoking, drinking, hypertension | 0.9539 | 0.7367 | 10 (0.0010) | 10/10 |
Fig. 1a Kaplan–Meier analysis of the overall survival based on FBN1 rs145233125 dominant model. b Kaplan–Meier analysis of the overall survival based on the FBN1 rs201170905 dominant model. c Kaplan–Meier analysis of the overall survival based on the TGFB1 rs11800469 dominant model
Fig. 2a Kaplan–Meier analysis of freedom from recurrence of chest pain based on the FBN1 rs145233125 recessive model. b Kaplan–Meier analysis of freedom from recurrence of chest pain based on the FBN1 rs201170905 recessive model. c Kaplan–Meier analysis of freedom from recurrence of chest pain based on the TGFB1 rs11800469 dominant model