Literature DB >> 35301463

Multiomics to elucidate inflammatory bowel disease risk factors and pathways.

Manasi Agrawal1,2, Kristine H Allin3,4, Francesca Petralia5, Jean-Frederic Colombel6, Tine Jess3,4.   

Abstract

Inflammatory bowel disease (IBD) is an immune-mediated disease of the intestinal tract, with complex pathophysiology involving genetic, environmental, microbiome, immunological and potentially other factors. Epidemiological data have provided important insights into risk factors associated with IBD, but are limited by confounding, biases and data quality, especially when pertaining to risk factors in early life. Multiomics platforms provide granular high-throughput data on numerous variables simultaneously and can be leveraged to characterize molecular pathways and risk factors for chronic diseases, such as IBD. Herein, we describe omics platforms that can advance our understanding of IBD risk factors and pathways, and available omics data on IBD and other relevant diseases. We highlight knowledge gaps and emphasize the importance of birth, at-risk and pre-diagnostic cohorts, and neonatal blood spots in omics analyses in IBD. Finally, we discuss network analysis, a powerful bioinformatics tool to assemble high-throughput data and derive clinical relevance.
© 2022. Springer Nature Limited.

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Year:  2022        PMID: 35301463      PMCID: PMC9214275          DOI: 10.1038/s41575-022-00593-y

Source DB:  PubMed          Journal:  Nat Rev Gastroenterol Hepatol        ISSN: 1759-5045            Impact factor:   73.082


  113 in total

1.  DNA Methylation Profiling in Inflammatory Bowel Disease Provides New Insights into Disease Pathogenesis.

Authors:  Edel McDermott; Elizabeth J Ryan; Miriam Tosetto; David Gibson; Joe Burrage; Denise Keegan; Kathryn Byrne; Eimear Crowe; Gillian Sexton; Kevin Malone; R Alan Harris; Richard Kellermayer; Jonathan Mill; Garret Cullen; Glen A Doherty; Hugh Mulcahy; Therese M Murphy
Journal:  J Crohns Colitis       Date:  2015-09-28       Impact factor: 9.071

2.  Infants born to mothers with IBD present with altered gut microbiome that transfers abnormalities of the adaptive immune system to germ-free mice.

Authors:  Joana Torres; Jianzhong Hu; Akihiro Seki; Caroline Eisele; Nilendra Nair; Ruiqi Huang; Leonid Tarassishin; Bindia Jharap; Justin Cote-Daigneault; Qixing Mao; Ilaria Mogno; Graham J Britton; Mathieu Uzzan; Ching-Lynn Chen; Asher Kornbluth; James George; Peter Legnani; Elana Maser; Holly Loudon; Joanne Stone; Marla Dubinsky; Jeremiah J Faith; Jose C Clemente; Saurabh Mehandru; Jean-Frederic Colombel; Inga Peter
Journal:  Gut       Date:  2019-04-29       Impact factor: 23.059

3.  Lipidomics in Ulcerative Colitis Reveal Alteration in Mucosal Lipid Composition Associated With the Disease State.

Authors:  Joseph Diab; Terkel Hansen; Rasmus Goll; Hans Stenlund; Maria Ahnlund; Einar Jensen; Thomas Moritz; Jon Florholmen; Guro Forsdahl
Journal:  Inflamm Bowel Dis       Date:  2019-10-18       Impact factor: 5.325

4.  Core Fucosylation on T Cells, Required for Activation of T-Cell Receptor Signaling and Induction of Colitis in Mice, Is Increased in Patients With Inflammatory Bowel Disease.

Authors:  Hironobu Fujii; Shinichiro Shinzaki; Hideki Iijima; Kana Wakamatsu; Chizuru Iwamoto; Tomoaki Sobajima; Ryusuke Kuwahara; Satoshi Hiyama; Yoshito Hayashi; Shinji Takamatsu; Naofumi Uozumi; Yoshihiro Kamada; Masahiko Tsujii; Naoyuki Taniguchi; Tetsuo Takehara; Eiji Miyoshi
Journal:  Gastroenterology       Date:  2016-03-08       Impact factor: 22.682

5.  A cohort incidence study of workers exposed to perfluorooctanoic acid (PFOA).

Authors:  Kyle Steenland; Liping Zhao; Andrea Winquist
Journal:  Occup Environ Med       Date:  2015-01-19       Impact factor: 4.402

Review 6.  Mammalian glycosylation in immunity.

Authors:  Jamey D Marth; Prabhjit K Grewal
Journal:  Nat Rev Immunol       Date:  2008-11       Impact factor: 53.106

7.  Large-scale association analyses identify host factors influencing human gut microbiome composition.

Authors:  Alexander Kurilshikov; Carolina Medina-Gomez; Rodrigo Bacigalupe; Djawad Radjabzadeh; Jun Wang; Ayse Demirkan; Caroline I Le Roy; Juan Antonio Raygoza Garay; Casey T Finnicum; Xingrong Liu; Daria V Zhernakova; Marc Jan Bonder; Tue H Hansen; Fabian Frost; Malte C Rühlemann; Williams Turpin; Jee-Young Moon; Han-Na Kim; Kreete Lüll; Elad Barkan; Shiraz A Shah; Myriam Fornage; Joanna Szopinska-Tokov; Zachary D Wallen; Dmitrii Borisevich; Lars Agreus; Anna Andreasson; Corinna Bang; Larbi Bedrani; Jordana T Bell; Hans Bisgaard; Michael Boehnke; Dorret I Boomsma; Robert D Burk; Annique Claringbould; Kenneth Croitoru; Gareth E Davies; Cornelia M van Duijn; Liesbeth Duijts; Gwen Falony; Jingyuan Fu; Adriaan van der Graaf; Torben Hansen; Georg Homuth; David A Hughes; Richard G Ijzerman; Matthew A Jackson; Vincent W V Jaddoe; Marie Joossens; Torben Jørgensen; Daniel Keszthelyi; Rob Knight; Markku Laakso; Matthias Laudes; Lenore J Launer; Wolfgang Lieb; Aldons J Lusis; Ad A M Masclee; Henriette A Moll; Zlatan Mujagic; Qi Qibin; Daphna Rothschild; Hocheol Shin; Søren J Sørensen; Claire J Steves; Jonathan Thorsen; Nicholas J Timpson; Raul Y Tito; Sara Vieira-Silva; Uwe Völker; Henry Völzke; Urmo Võsa; Kaitlin H Wade; Susanna Walter; Kyoko Watanabe; Stefan Weiss; Frank U Weiss; Omer Weissbrod; Harm-Jan Westra; Gonneke Willemsen; Haydeh Payami; Daisy M A E Jonkers; Alejandro Arias Vasquez; Eco J C de Geus; Katie A Meyer; Jakob Stokholm; Eran Segal; Elin Org; Cisca Wijmenga; Hyung-Lae Kim; Robert C Kaplan; Tim D Spector; Andre G Uitterlinden; Fernando Rivadeneira; Andre Franke; Markus M Lerch; Lude Franke; Serena Sanna; Mauro D'Amato; Oluf Pedersen; Andrew D Paterson; Robert Kraaij; Jeroen Raes; Alexandra Zhernakova
Journal:  Nat Genet       Date:  2021-01-18       Impact factor: 41.307

8.  A longitudinal cohort study of body mass index and childhood exposure to secondhand tobacco smoke and air pollution: the Southern California Children's Health Study.

Authors:  Rob McConnell; Ernest Shen; Frank D Gilliland; Michael Jerrett; Jennifer Wolch; Chih-Chieh Chang; Frederick Lurmann; Kiros Berhane
Journal:  Environ Health Perspect       Date:  2014-11-12       Impact factor: 9.031

9.  Individual and Joint Effects of Early-Life Ambient Exposure and Maternal Prepregnancy Obesity on Childhood Overweight or Obesity.

Authors:  Guangyun Mao; Rebecca Massa Nachman; Qi Sun; Xingyou Zhang; Kirsten Koehler; Zhu Chen; Xiumei Hong; Guoying Wang; Deanna Caruso; Geng Zong; Colleen Pearson; Hongkai Ji; Shyam Biswal; Barry Zuckerman; Marsha Wills-Karp; Xiaobin Wang
Journal:  Environ Health Perspect       Date:  2017-06-14       Impact factor: 9.031

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  4 in total

1.  Recombinant Bifidobacterium longum Carrying Endostatin Protein Alleviates Dextran Sodium Sulfate-Induced Colitis and Colon Cancer in Rats.

Authors:  Zhiqian Bi; Enqing Cui; Yingying Yao; Xiaoyao Chang; Xiaoyang Wang; Yuhui Zhang; Gen-Xing Xu; Hongqin Zhuang; Zi-Chun Hua
Journal:  Front Microbiol       Date:  2022-06-30       Impact factor: 6.064

Review 2.  Pivotal Role of Inflammation in Celiac Disease.

Authors:  Maria Vittoria Barone; Renata Auricchio; Merlin Nanayakkara; Luigi Greco; Riccardo Troncone; Salvatore Auricchio
Journal:  Int J Mol Sci       Date:  2022-06-28       Impact factor: 6.208

Review 3.  Applications of human organoids in the personalized treatment for digestive diseases.

Authors:  Qinying Wang; Fanying Guo; Yutao Jin; Yanlei Ma
Journal:  Signal Transduct Target Ther       Date:  2022-09-27

4.  Validity of Inflammatory Bowel Disease Diagnoses in the Danish National Patient Registry: A Population-Based Study from the North Denmark Region.

Authors:  Henrik Albaek Jacobsen; Tine Jess; Lone Larsen
Journal:  Clin Epidemiol       Date:  2022-10-06       Impact factor: 5.814

  4 in total

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